Sandrine Dudoit

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 7

Top Topics

Covariance Matrix

Top Venues

J. Open Source Softw.

J. Comput. Graph. Stat.

Publications

Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit
Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinform. 25 (1) (2024)
Philippe Boileau, Nima S. Hejazi, Mark J. van der Laan, Sandrine Dudoit
Cross-Validated Loss-based Covariance Matrix Estimator Selection in High Dimensions. J. Comput. Graph. Stat. 32 (2) (2023)
Philippe Boileau, Nima S. Hejazi, Brian Collica, Mark J. van der Laan, Sandrine Dudoit
cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R. J. Open Source Softw. 6 (63) (2021)
Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit
scPCA: A toolbox for sparse contrastive principal component analysis in R. J. Open Source Softw. 5 (46) (2020)
Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit
Exploring high-dimensional biological data with sparse contrastive principal component analysis. Bioinform. 36 (11) (2020)
Courtney Schiffman, Lauren Petrick, Kelsi Perttula, Yukiko Yano, Henrik Carlsson, Todd Whitehead, Catherine Metayer, Josie Hayes, Stephen M. Rappaport, Sandrine Dudoit
Filtering procedures for untargeted LC-MS metabolomics data. BMC Bioinform. 20 (1) (2019)
Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. PLoS Comput. Biol. 14 (9) (2018)
Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit
GC-Content Normalization for RNA-Seq Data. BMC Bioinform. 12 (2011)
James H. Bullard, Elizabeth Purdom, Kasper D. Hansen, Sandrine Dudoit
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinform. 11 (2010)
Steffen Durinck, James H. Bullard, Paul T. Spellman, Sandrine Dudoit
GenomeGraphs: integrated genomic data visualization with R. BMC Bioinform. 10 (2009)
David Shilane, Jarno Martikainen, Sandrine Dudoit, Seppo J. Ovaska
A general framework for statistical performance comparison of evolutionary computation algorithms. Inf. Sci. 178 (14) (2008)
Sündüz Keles, Mark J. van der Laan, Sandrine Dudoit, Simon E. Cawley
Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data. J. Comput. Biol. 13 (3) (2006)
David Shilane, Jarno Martikainen, Sandrine Dudoit, Seppo J. Ovaska
A General Framework for Statistical Performance Comparison of Evolutionary Computation Algorithms. Artificial Intelligence and Applications (2006)
Sandrine Dudoit, Mark J. van der Laan, Sündüz Keles, Annette M. Molinaro, Sandra E. Sinisi, Siew Leng Teng
Loss-based estimation with cross-validation: applications to microarray data analysis. SIGKDD Explor. 5 (2) (2003)
Sandrine Dudoit, Jane Fridlyand
Bagging to Improve the Accuracy of A Clustering Procedure. Bioinform. 19 (9) (2003)