Federico Fogolari

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 4

Top Topics

Saccharomyces Cerevisiae

Top Venues

J. Comput. Biol.

J. Comput. Chem.

Comput. Phys. Commun.

Publications

Miguel A. Soler, Ozge Ozkilinc, Yamanappa Hunashal, Paolo Giannozzi, Gennaro Esposito, Federico Fogolari
Molecular electrostatics and pKa shifts calculations with the Generalized Born model. A tutorial through examples with Bluues2. Comput. Phys. Commun. 287 (2023)
Saida S. Mohamed, Gennaro Esposito, Giuseppe Serra, Federico Fogolari
Generalized Born radii computation using linear models and neural networks. Bioinform. 36 (6) (2020)
Federico Fogolari, Ornela Maloku, Cedrix Jurgal Dongmo Foumthuim, Alessandra Corazza, Gennaro Esposito
PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles. J. Chem. Inf. Model. 58 (7) (2018)
Fabrizio Serra, Chiara Romualdi, Federico Fogolari
Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data. J. Comput. Biol. 23 (7) (2016)
Federico Fogolari, Alessandra Corazza, Gennaro Esposito
Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes. J. Comput. Chem. 36 (9) (2015)
Federico Fogolari, Alessandra Corazza, Paolo Viglino, Gennaro Esposito
Fast structure similarity searches among protein models: efficient clustering of protein fragments. Algorithms Mol. Biol. 7 (2012)
Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii. BMC Bioinform. 13 (S-4) (2012)
Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari
Bluues server: electrostatic properties of wild-type and mutated protein structures. Bioinform. 28 (16) (2012)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
Exploring Protein Fragment Assembly Using CLP. IJCAI (2011)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
CLP-based protein fragment assembly CoRR (2010)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
CLP-based Protein Fragment Assembly. CILC (2010)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari, Enrico Pontelli
CLP-based protein fragment assembly. Theory Pract. Log. Program. 10 (4-6) (2010)
Luca Bortolussi, Agostino Dovier, Federico Fogolari
Agent-based protein structure prediction. Multiagent Grid Syst. 3 (2) (2007)
Federico Fogolari, Silvio C. E. Tosatto, Giorgio Colombo
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators. BMC Bioinform. 6 (2005)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
Constraint Logic Programming approach to protein structure prediction. BMC Bioinform. 5 (2004)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
Protein Folding Simulation in CCP. ICLP (2004)
Alessandro Dal Palù, Agostino Dovier, Federico Fogolari
Protein Folding in CLP(FD) with Empirical Contact Energies. CSCLP (2003)
Marco Berrera, Henriette Molinari, Federico Fogolari
Amino acid empirical contact energy definitions for fold recognition in the space of contact maps. BMC Bioinform. 4 (2003)
Agostino Dovier, Matteo Burato, Federico Fogolari
Using Secondary Structure Information for Protein Folding in CLP(FD). Electron. Notes Theor. Comput. Sci. 76 (2002)
Federico Fogolari, Gennaro Esposito, Paolo Viglino, Henriette Molinari
Molecular mechanics and dynamics of biomolecules using a solvent continuum model. J. Comput. Chem. 22 (15) (2001)