Fast structure similarity searches among protein models: efficient clustering of protein fragments.
Federico FogolariAlessandra CorazzaPaolo ViglinoGennaro EspositoPublished in: Algorithms Mol. Biol. (2012)
Keyphrases
- similarity search
- contact map
- molecular structures
- data partitioning
- protein sequences
- indexing structure
- physicochemical properties
- probabilistic model
- clustering algorithm
- protein structure
- amino acids
- mass spectra
- sequence alignment
- hierarchical clustering
- efficient similarity search
- k means
- protein function
- mass spectrometry
- sequence databases
- protein folding
- vector space
- feature selection
- chemical reactions
- indexing techniques
- high dimensional
- clustering method