Matej Lexa

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 8

Top Topics

Top Venues

Briefings Bioinform.

Publications

Matej Lexa, Monika Cechova, Son Hoang Nguyen, Pavel Jedlicka, Viktor Tokan, Zdenek Kubat, Roman Hobza, Eduard Kejnovský
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization. Bioinform. 38 (16) (2022)
Pratik Goswami, Martin Bartas, Matej Lexa, Natália Bohálová, Adriana Volná, Jirí Cerven, Veronika Cervenová, Petr Pecinka, Vladimír Spunda, Miroslav Fojta, Václav Brázda
SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci. Briefings Bioinform. 22 (2) (2021)
Matej Lexa, Pavel Jedlicka, Ivan Vanat, Michal Cervenanský, Eduard Kejnovský
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting. Bioinform. 36 (20) (2020)
Dominika Labudová, Jirí Hon, Matej Lexa
pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm. Bioinform. 36 (8) (2020)
Matej Lexa, Radovan Lapar, Pavel Jedlicka, Ivan Vanat, Michal Cervenanský, Eduard Kejnovský
TE-nester: a recursive software tool for structure-based discovery of nested transposable elements. BIBM (2018)
Jirí Hon, Tomás Martínek, Jaroslav Zendulka, Matej Lexa
pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R. Bioinform. 33 (21) (2017)
Matej Lexa, Radovan Lapar
Semi-automatic mining of correlated data from a complex database: Correlation network visualization. ICCABS (2016)
Adam Krejci, Ted R. Hupp, Matej Lexa, Borivoj Vojtesek, Petr Müller
Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets. Bioinform. 32 (1) (2016)
Stanislav Stefanic, Matej Lexa
A Flexible Denormalization Technique for Data Analysis above a Deeply-Structured Relational Database: Biomedical Applications. IWBBIO (1) (2015)
Matej Lexa, Tomás Martínek, Marie Brázdová
Uneven Distribution of Potential Triplex Sequences in the Human Genome - In Silico Study using the R/Bioconductor Package Triplex. BIOINFORMATICS (2014)
Matej Lexa, Stanislav Stefanic
The Possibilities of Filtering Pairs of SNPs in GWAS Studies - Exploratory Study on Public Protein-interaction and Pathway Data. BIOINFORMATICS (2014)
Jirí Hon, Tomás Martínek, Kamil Rajdl, Matej Lexa
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences. Bioinform. 29 (15) (2013)
Vojtech Bystrý, Matej Lexa
cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis. BIOINFORMATICS (2012)
Matej Lexa, Lucie Navrátilová, Karel Nejedlý, Marie Brázdová
Prediction of Significant Cruciform Structures from Sequence in Topologically Constrained DNA - A Probabilistic Modelling Approach. BIOINFORMATICS (2012)
Matej Lexa, Tomás Martínek, Ivana Burgetova, Daniel Kopecek, Marie Brázdová
A dynamic programming algorithm for identification of triplex-forming sequences. Bioinform. 27 (18) (2011)
Tomás Martínek, Matej Lexa
Architecture model for approximate tandem repeat detection. ASAP (2011)
Tomás Martínek, Matej Lexa
Hardware Acceleration of Approximate Tandem Repeat Detection. FCCM (2010)
Ivana Rudolfova, Jaroslav Zendulka, Matej Lexa
Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments. ITBAM (2010)
Tomás Martínek, Jan Vozenilek, Matej Lexa
Architecture model for approximate palindrome detection. DDECS (2009)
Tomás Martínek, Matej Lexa
Hardware acceleration of approximate palindromes searching. FPT (2008)
Tomás Martínek, Otto Fucík, Patrik Beck, Matej Lexa
Automatic Generation of Circuits for Approximate String Matching. DDECS (2007)
Tomás Martínek, Jan Korenek, Otto Fucík, Matej Lexa
A Flexible Technique for the Automatic Design of Approximate String Matching Architectures. DDECS (2006)
Davide Campagna, Chiara Romualdi, Nicola Vitulo, Micky Del Favero, Matej Lexa, Nicola Cannata, Giorgio Valle
RAP: a new computer program for de novo identification of repeated sequences in whole genomes. Bioinform. 21 (5) (2005)
Matej Lexa, Giorgio Valle
PRIMEX: rapid identification of oligonucleotide matches in whole genomes. Bioinform. 19 (18) (2003)
Matej Lexa, J. Horak, Bretislav Brzobohaty
Virtual PCR. Bioinform. 17 (1) (2001)