Kentaro Shimizu

Publication Activity (10 Years)

Years Active: 1982-2022
Publications (10 Years): 12

Top Topics

Support Vector Machine

Protein Sequences

Convolutional Neural Network

Ensemble Learning

Top Venues

J. Bioinform. Comput. Biol.

Comput. Biol. Chem.

Publications

Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. Comput. Biol. Chem. 100 (2022)
Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu
Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. J. Bioinform. Comput. Biol. 20 (6) (2022)
Keisuke Yanagisawa, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. J. Chem. Inf. Model. 61 (6) (2021)
Takayuki Osabe, Kentaro Shimizu, Koji Kadota
Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data. BMC Bioinform. 22 (1) (2021)
Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu
3D Object Detection Method Based on YOLO and K-Means for Image and Point Clouds. CoRR (2020)
Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu
YOLO and K-Means Based 3D Object Detection Method on Image and Point Cloud. CoRR (2020)
Chun Fang, Yoshitaka Moriwaki, Aikui Tian, Caihong Li, Kentaro Shimizu
Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. J. Bioinform. Comput. Biol. 17 (1) (2019)
Chun Fang, Yoshitaka Moriwaki, Caihong Li, Kentaro Shimizu
MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy. J. Bioinform. Comput. Biol. 17 (6) (2019)
Masaki Banno, Yusuke Komiyama, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. 66 (2017)
Shunsuke Shigemitsu, Cao Wei, Tohru Terada, Kentaro Shimizu
Development of a prediction system for tail-anchored proteins. BMC Bioinform. 17 (2016)
Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, Kentaro Shimizu
Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. Bioinform. 32 (6) (2016)
Qian Li, Zhenglu Yang, Wei Cao, Kentaro Shimizu
An effective system for managing biological data. BESC (2016)
Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota
Evaluation of methods for differential expression analysis on multi-group RNA-seq count data. BMC Bioinform. 16 (2015)
Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu
Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics 2015 (2015)
Tatsuki Negami, Kentaro Shimizu, Tohru Terada
Coarse-grained molecular dynamics simulations of protein-ligand binding. J. Comput. Chem. 35 (25) (2014)
Masafumi Suzuki, Kentaro Shimizu, Shinyo Muto, Naoki Uchida
Office in the cloud: Web-based cloud platform for Telcos services. ICIN (2013)
Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota
TCC: an R package for comparing tag count data with robust normalization strategies. BMC Bioinform. 14 (2013)
Kentaro Shimizu, Seiji Nishinaga, Shinyo Muto, Naoki Uchida
Office on Demand: New cloud service platform for carrier. ICIN (2012)
Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu
A normalization strategy for comparing tag count data. Algorithms Mol. Biol. 7 (2012)
Koji Kadota, Kentaro Shimizu
Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data. BMC Bioinform. 12 (2011)
Ryota Jono, Yuusuke Watanabe, Kentaro Shimizu, Tohru Terada
QM/MM molecular dynamics simulation of a peptide in an aqueous environment. J. Comput. Chem. 31 (6) (2010)
Osamu Hirose, Kentaro Shimizu
A Self-organizing State Space Approach to Inferring Time-Varying Causalities between Regulatory Proteins. ITBAM (2010)
Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics 2010 (2010)
Koji Kadota, Yuji Nakai, Kentaro Shimizu
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. Algorithms Mol. Biol. 4 (2009)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
Computational Protocol for Screening GPI-anchored Proteins. BICoB (2009)
Koji Kadota, Yuji Nakai, Kentaro Shimizu
A weighted average difference method for detecting differentially expressed genes from microarray data. Algorithms Mol. Biol. 3 (2008)
Masanori Kakuta, Shugo Nakamura, Kentaro Shimizu
Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. Inf. Media Technol. 3 (2) (2008)
Junta Doi, Kentaro Shimizu, Masakazu Sekijima
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection. ICNSC (2007)
Koji Kadota, Jiazhen Ye, Yuji Nakai, Tohru Terada, Kentaro Shimizu
ROKU: a novel method for identification of tissue-specific genes. BMC Bioinform. 7 (2006)
Junta Doi, Kentaro Shimizu, Wataru Sato
High-Density Scanning Combined with Digital Image of Real Objects for Complete Reproduction of Cultural Artifacts. MFI (2006)
Junta Doi, Kentaro Shimizu, Wataru Sato, Shinji Morishita
High-Precision Geometric Modeling of 3D Artifacts for Virtual Restoration. VECIMS (2006)
Junta Doi, Kentaro Shimizu, Masahiko Hoshi
Reuse of reconstructed model of human skull for anthropological and anthropoid morphological model estimation. IRI (2006)
Cao Wei, Kentaro Shimizu
Identification of GPI-(like)-Anchored Proteins by Using SVM. IMSCCS (2) (2006)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP (2006)
Akira Nomoto, Yasuo Watanabe, Wataru Kaneko, Shugo Nakamura, Kentaro Shimizu
Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems. Clust. Comput. 7 (1) (2004)
Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops (2004)
Wataru Kaneko, Kenji Kono, Kentaro Shimizu
Preemptive Resource Management: Defending against Resource Monopolizing DoS. Applied Informatics (2003)
Wataru Kaneko, Akira Nomoto, Yasuo Watanabe, Shugo Nakamura, Kentaro Shimizu
Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays. ISHPC (2003)
Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS (2002)
Shugo Nakamura, Daisuke Kyono, Mitsunori Ikeguchi, Kentaro Shimizu
New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates. J. Comput. Chem. 23 (4) (2002)
Soichi Shigeta, Kentaro Shimizu, Masahiro Sowa
Access route control by an extended key/lock scheme. Comput. Syst. Sci. Eng. 16 (5) (2001)
Hiroshi Yoshikawa, Mitsunori Ikeguchi, Shugo Nakamura, Kentaro Shimizu, Junta Doi
Prediction of protein structure classes and secondary structures by means of hidden Markov models. Systems and Computers in Japan 30 (13) (1999)
Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu
Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates. J. Comput. Chem. 19 (15) (1998)
Yasuo Kuhara, Kentaro Shimizu, Junta Doi
Time-of-Reduction-Recovery Predicton in Neural Networks of Variable Topology to Improve Enzyme Classification. NC (1998)
R. C. Betini, Hisao Kameda, Kentaro Shimizu
Flow Control and Routing Algorithms in WAPSN. Comput. Commun. 18 (5) (1995)
Yongbing Zhang, Katsuya Hakozaki, Hisao Kameda, Kentaro Shimizu
A performance comparison of adaptive and static load balancing in heterogeneous distributed systems. Annual Simulation Symposium (1995)
Yongbing Zhang, Hisao Kameda, Kentaro Shimizu
Adaptive Bidding Load Balancing Algorithms in Heterogeneous Distributed Systems. MASCOTS (1994)
Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa
A Paraellel and Nonblocking Updating Mechanism for Replicated Directory Files in Distributed Systems. J. Parallel Distributed Comput. 20 (3) (1994)
Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu
Improving the Reliability of Name Resolution Mechanism in Distributed Operating Systems. ICDCS (1992)
Pradeep Kumar Sinha, Hyo Ashihara, Kentaro Shimizu, Mamoru Maekawa
Flexible User-Definable Memory Coherence Scheme in Distributed Shared Memory of GALAXY. EDMCC (1991)
Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu, Xiaohua Jia, Hyo Ashihara, Naoki Utsunomiya, Kyu Sung Park, Hirohiko Nakano
The Galaxy Distributed Operating System. Computer 24 (8) (1991)
Pradeep Kumar Sinha, Kyu Sung Park, Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa
Process Migration in the GALAXY Distributed Operating System. IPPS (1991)
Xiaohua Jia, Hirohiko Nakano, Kentaro Shimizu, Mamoru Maekawa
Highly Concurrent Directory Management in the Galaxy Distributed System. ICDCS (1990)
Kentaro Shimizu, Eiichi Goto, Shuichi Ichikawa
CPC (Cyclic Pipeline Computer) - An Architecture Suited for Josephson and Pipelined-Memory Machines. IEEE Trans. Computers 38 (6) (1989)
Kentaro Shimizu, Mamoru Maekawa, Jun Hamano
Hierarchical Object Groups in Distributed Operating Systems. ICDCS (1988)
Kentaro Shimizu
A Portable Logic Simulation System for Development of FLATS Machine. RIMS Symposia on Software Science and Engineering (1984)
Eiichi Goto, Takashi Soma, N. Inada, Tetsuo Ida, Masanori Idesawa, Kei Hiraki, M. Suzuki, Kentaro Shimizu, B. Philipov
Design of a Lisp Machine - FLATS. Symposium on LISP and Functional Programming (1982)