Tohru Terada

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 6

Top Topics

Support Vector Machine

Solvent Accessibility

Energy Landscape

Molecular Dynamics

Top Venues

Comput. Biol. Chem.

J. Comput. Chem.

Adv. Bioinformatics

Publications

Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. Comput. Biol. Chem. 100 (2022)
Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu
Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. J. Bioinform. Comput. Biol. 20 (6) (2022)
Keisuke Yanagisawa, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu
EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. J. Chem. Inf. Model. 61 (6) (2021)
Masaki Banno, Yusuke Komiyama, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. 66 (2017)
Shunsuke Shigemitsu, Cao Wei, Tohru Terada, Kentaro Shimizu
Development of a prediction system for tail-anchored proteins. BMC Bioinform. 17 (2016)
Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu
Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics 2015 (2015)
Kei Moritsugu, Tohru Terada, Akinori Kidera
Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling. PLoS Comput. Biol. 10 (10) (2014)
Tatsuki Negami, Kentaro Shimizu, Tohru Terada
Coarse-grained molecular dynamics simulations of protein-ligand binding. J. Comput. Chem. 35 (25) (2014)
Yasuhiro Matsunaga, Hiroshi Fujisaki, Tohru Terada, Tadaomi Furuta, Kei Moritsugu, Akinori Kidera
Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase. PLoS Comput. Biol. 8 (6) (2012)
Ryota Jono, Yuusuke Watanabe, Kentaro Shimizu, Tohru Terada
QM/MM molecular dynamics simulation of a peptide in an aqueous environment. J. Comput. Chem. 31 (6) (2010)
Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics 2010 (2010)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
Computational Protocol for Screening GPI-anchored Proteins. BICoB (2009)
Koji Kadota, Jiazhen Ye, Yuji Nakai, Tohru Terada, Kentaro Shimizu
ROKU: a novel method for identification of tissue-specific genes. BMC Bioinform. 7 (2006)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP (2006)
Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops (2004)