Shugo Nakamura

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 5

Top Topics

Protein Sequences

Prediction Model

Solvent Accessibility

Top Venues

Adv. Bioinformatics

Publications

Phuong Dinh, Deddy Jobson, Takashi Sano, Hirotada Honda, Shugo Nakamura
Understanding Neural ODE prediction decision using SHAP. NLDL (2024)
Tuan Nguyen, Hirotada Honda, Takashi Sano, Vinh Nguyen, Shugo Nakamura, Tan Minh Nguyen
From Coupled Oscillators to Graph Neural Networks: Reducing Over-smoothing via a Kuramoto Model-based Approach. AISTATS (2024)
Hirotada Honda, Takashi Sano, Shugo Nakamura, Mitsuaki Ueno, Hiroki Hanazawa, Nguyen Manh Duc Tuan
An ODE-based neural network with Bayesian optimization. JSIAM Lett. 15 (2023)
Tuan Nguyen, Tan M. Nguyen, Hirotada Honda, Takashi Sano, Vinh Nguyen, Shugo Nakamura
From Coupled Oscillators to Graph Neural Networks: Reducing Over-smoothing via a Kuramoto Model-based Approach. CoRR (2023)
Masaki Banno, Yusuke Komiyama, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. 66 (2017)
Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu
Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics 2015 (2015)
Satoshi Yamasaki, Shugo Nakamura, Kazuhiko Fukui
Prospects for Tertiary Structure Prediction of RNA Based on Secondary Structure Information. J. Chem. Inf. Model. 52 (2) (2012)
Masaki Ishihara, Shugo Nakamura, Takayuki Baba, Masahiko Sugimura, Susumu Endo, Yusuke Uehara, Daiki Masumoto
Industry Track: An Image Classification and Browsing System for Farm Inspection. ISM (2011)
Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics 2010 (2010)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu
Computational Protocol for Screening GPI-anchored Proteins. BICoB (2009)
Masanori Kakuta, Shugo Nakamura, Kentaro Shimizu
Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. Inf. Media Technol. 3 (2) (2008)
Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP (2006)
Akira Nomoto, Yasuo Watanabe, Wataru Kaneko, Shugo Nakamura, Kentaro Shimizu
Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems. Clust. Comput. 7 (1) (2004)
Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu
Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops (2004)
Wataru Kaneko, Akira Nomoto, Yasuo Watanabe, Shugo Nakamura, Kentaro Shimizu
Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays. ISHPC (2003)
Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS (2002)
Shugo Nakamura, Daisuke Kyono, Mitsunori Ikeguchi, Kentaro Shimizu
New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates. J. Comput. Chem. 23 (4) (2002)
Hiroshi Yoshikawa, Mitsunori Ikeguchi, Shugo Nakamura, Kentaro Shimizu, Junta Doi
Prediction of protein structure classes and secondary structures by means of hidden Markov models. Systems and Computers in Japan 30 (13) (1999)
Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu
Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates. J. Comput. Chem. 19 (15) (1998)