André Fujita

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 15

Top Topics

Spectral Density

Complex Networks

Top Venues

J. Complex Networks

Comput. Stat. Data Anal.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Grover E. C. Guzman, André Fujita
A fast algorithm to approximate the spectral density of locally tree-like networks with assortativity. J. Complex Networks 11 (2) (2023)
Victor Chavauty Villela, Eduardo Silva Lira, André Fujita
Spectrum-Based Statistical Methods for Directed Graphs with Applications in Biological Data. BSB (2023)
Carlos E. M. Relvas, Asuka Nakata, Guoan Chen, David G. Beer, Noriko Gotoh, André Fujita
A model-based clustering algorithm with covariates adjustment and its application to lung cancer stratification. J. Bioinform. Comput. Biol. 21 (4) (2023)
Grover E. C. Guzman, Peter F. Stadler, André Fujita
Efficient eigenvalue counts for tree-like networks. J. Complex Networks 10 (5) (2022)
Grover E. C. Guzman, Daniel Yasumasa Takahashi, André Fujita
A fast parameter estimator for large complex networks. J. Complex Networks 10 (3) (2022)
Adèle Helena Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder. Entropy 23 (9) (2021)
Renata B. Biazzi, André Fujita, Daniel Y. Takahashi
Predicting soft robot's locomotion fitness. GECCO Companion (2021)
Grover E. C. Guzman, André Fujita
Convolution-based linear discriminant analysis for functional data classification. Inf. Sci. 581 (2021)
Grover E. C. Guzman, Peter F. Stadler, André Fujita
Efficient Laplacian spectral density computations for networks with arbitrary degree distributions. Netw. Sci. 9 (3) (2021)
Suzana de Siqueira Santos, André Fujita, Catherine Matias
Spectral density of random graphs: convergence properties and application in model fitting. J. Complex Networks 9 (6) (2021)
Carlos Relvas, André Fujita
Stage I non-small cell lung cancer stratification by using a model-based clustering algorithm with covariates. CoRR (2020)
André Fujita, Eduardo Silva Lira, Suzana de Siqueira Santos, Silvia Yumi Bando, Gabriela Eleutério Soares, Daniel Yasumasa Takahashi
A semi-parametric statistical test to compare complex networks. J. Complex Networks 8 (2) (2020)
João Ricardo Sato, Maciel Calebe Vidal, Suzana de Siqueira Santos, Katlin Brauer Massirer, André Fujita
Complex Network Measures in Autism Spectrum Disorders. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
André Fujita, Daniel Yasumasa Takahashi, Joana Bisol Balardin, Maciel Calebe Vidal, João Ricardo Sato
Correlation between graphs with an application to brain network analysis. Comput. Stat. Data Anal. 109 (2017)
Abner C. Rodrigues, Birajara S. Machado, Luis Otavio S. F. Caboclo, André Fujita, Luiz A. Baccalá, Koichi Sameshima
Source and sink nodes in absence seizures. EMBC (2016)
André Fujita, Daniel Yasumasa Takahashi, Alexandre Galvão Patriota
A non-parametric method to estimate the number of clusters. Comput. Stat. Data Anal. 73 (2014)
Suzana de Siqueira Santos, Daniel Yasumasa Takahashi, Asuka Nakata, André Fujita
A comparative study of statistical methods used to identify dependencies between gene expression signals. Briefings Bioinform. 15 (6) (2014)
João Ricardo Sato, Daniel Yasumasa Takahashi, Marcelo Queiroz Hoexter, Katlin Brauer Massirer, André Fujita
Measuring network's entropy in ADHD: A new approach to investigate neuropsychiatric disorders. NeuroImage 77 (2013)
Masao Nagasaki, André Fujita, Yayoi Sekiya, Ayumu Saito, Emi Ikeda, Chen Li, Satoru Miyano
XiP: a computational environment to create, extend and share workflows. Bioinform. 29 (1) (2013)
André Fujita, Patricia Severino, Kaname Kojima, João Ricardo Sato, Alexandre Galvão Patriota, Satoru Miyano
Functional clustering of time series gene expression data by Granger causality. BMC Syst. Biol. 6 (2012)
Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano
Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genom. 13 (S-1) (2012)
Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita
Discriminating different classes of biological networks by analyzing the graphs spectra distribution CoRR (2012)
Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano
Systems biology model repository for macrophage pathway simulation. Bioinform. 27 (11) (2011)
André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Rui Yamaguchi, Teppei Shimamura, Carlos Eduardo Ferreira, Mari Cleide Sogayar, Satoru Miyano
Inferring Contagion in Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
João Ricardo Sato, André Fujita, Elisson F. Cardoso, Carlos E. Thomaz, Michael J. Brammer, Edson Amaro Jr.
Analyzing the connectivity between regions of interest: An approach based on cluster Granger causality for fMRI data analysis. NeuroImage 52 (4) (2010)
André Fujita, Kaname Kojima, Alexandre Galvão Patriota, João Ricardo Sato, Patricia Severino, Satoru Miyano
A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets. Bioinform. 26 (18) (2010)
André Fujita, Patricia Severino, João Ricardo Sato, Satoru Miyano
Granger Causality in Systems Biology: Modeling Gene Networks in Time Series Microarray Data Using Vector Autoregressive Models. BSB (2010)
André Fujita, João Ricardo Sato, Kaname Kojima, Luciana Rodrigues Gomes, Masao Nagasaki, Mari Cleide Sogayar, Satoru Miyano
Identification of Granger Causality between Gene Sets. J. Bioinform. Comput. Biol. 8 (4) (2010)
Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano
Model-free unsupervised gene set screening based on information enrichment in expression profiles. Bioinform. 26 (24) (2010)
João Ricardo Sato, André Fujita, Carlos Eduardo Thomaz, Maria da Graça Morais Martin, Janaina Mourão Miranda, Michael John Brammer, Edson Amaro Júnior
Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction. NeuroImage 46 (1) (2009)
André Fujita, Alexandre Galvão Patriota, João Ricardo Sato, Satoru Miyano
The impact of measurement errors in the identification of regulatory networks. BMC Bioinform. 10 (2009)
André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano
Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis. J. Bioinform. Comput. Biol. 7 (4) (2009)
João Ricardo Sato, André Fujita, Carlos Eduardo Thomaz, Maria da Graça Morais Martin, Janaina Mourão Miranda, Michael John Brammer, Edson Amaro Jr.
Corrigendum to "Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction": [NeuroImage 46 (2009) 105-114]. NeuroImage 47 (1) (2009)
Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, André Fujita, Masao Nagasaki, Satoru Miyano
Recursive regularization for inferring gene networks from time-course gene expression profiles. BMC Syst. Biol. 3 (2009)
André Fujita, Luciana Rodrigues Gomes, João Ricardo Sato, Rui Yamaguchi, Carlos E. Thomaz, Mari Cleide Sogayar, Satoru Miyano
Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. BMC Syst. Biol. 2 (2008)
André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano
Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data. J. Bioinform. Comput. Biol. 6 (5) (2008)
João Ricardo Sato, Carlos Eduardo Thomaz, Ellison Fernando Cardoso, André Fujita, Maria da Graça Morais Martin, Edson Amaro Jr.
Hyperplane navigation: A method to set individual scores in fMRI group datasets. NeuroImage 42 (4) (2008)
André Fujita, João Ricardo Sato, Carlos Eduardo Ferreira, Mari Cleide Sogayar
GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. BMC Bioinform. 8 (2007)
João Ricardo Sato, André Fujita, Edson Amaro Jr., Janaina Mourão Miranda, Pedro Alberto Morettin, Michael John Brammer
DWT-CEM: an algorithm for scale-temporal clustering in fMRI. Biol. Cybern. 97 (1) (2007)
André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Rui Yamaguchi, Satoru Miyano, Mari Cleide Sogayar, Carlos Eduardo Ferreira
Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Syst. Biol. 1 (2007)
André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Pedro Alberto Morettin, Mari Cleide Sogayar, Carlos Eduardo Ferreira
Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. Bioinform. 23 (13) (2007)
André Fujita, João Ricardo Sato, Leonardo de Oliveira Rodrigues, Carlos Eduardo Ferreira, Mari Cleide Sogayar
Evaluating different methods of microarray data normalization. BMC Bioinform. 7 (2006)