Ryo Yoshida

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 27

Top Topics

Statistical Inference

Automatic Detection

Top Venues

J. Chem. Inf. Model.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Ryo Yoshida, Taiga Someya, Yohei Oseki
Tree-Planted Transformers: Unidirectional Transformer Language Models with Implicit Syntactic Supervision. ACL (Findings) (2024)
Ryo Yoshida, Taiga Someya, Yohei Oseki
Tree-Planted Transformers: Large Language Models with Implicit Syntactic Supervision. CoRR (2024)
Taiga Someya, Ryo Yoshida, Yohei Oseki
Targeted Syntactic Evaluation on the Chomsky Hierarchy. LREC/COLING (2024)
Kohei Noda, Araki Wakiuchi, Yoshihiro Hayashi, Ryo Yoshida
Advancing Extrapolative Predictions of Material Properties through Learning to Learn. CoRR (2024)
Tatsuki Kuribayashi, Ryo Ueda, Ryo Yoshida, Yohei Oseki, Ted Briscoe, Timothy Baldwin
Emergent Word Order Universals from Cognitively-Motivated Language Models. CoRR (2024)
Mitsuhide Sato, Keigo Takazawa, Ryo Yoshida, Masami Nirei, Tsutomu Mizuno
Expansion of Motor High-Efficiency Area by Inserting Magnetic Composite Material into Rotor. IEEE Access 11 (2023)
Mitsuru Ohno, Yoshihiro Hayashi, Qi Zhang, Yu Kaneko, Ryo Yoshida
SMiPoly: Generation of a Synthesizable Polymer Virtual Library Using Rule-Based Polymerization Reactions. J. Chem. Inf. Model. 63 (17) (2023)
Shunya Minami, Kenji Fukumizu, Yoshihiro Hayashi, Ryo Yoshida
Transfer Learning with Affine Model Transformation. NeurIPS (2023)
Shunya Minami, Kenji Fukumizu, Yoshihiro Hayashi, Ryo Yoshida
Transfer learning with affine model transformation. CoRR (2022)
Qi Zhang, Chang Liu, Stephen Wu, Ryo Yoshida
Bayesian Sequential Stacking Algorithm for Concurrently Designing Molecules and Synthetic Reaction Networks. CoRR (2022)
Ryo Yoshida, Yohei Oseki
Composition, Attention, or Both? EMNLP (Findings) (2022)
Ryo Yoshida, Yohei Oseki
Composition, Attention, or Both? CoRR (2022)
Megumi Iwayama, Stephen Wu, Chang Liu, Ryo Yoshida
Functional Output Regression for Machine Learning in Materials Science. J. Chem. Inf. Model. 62 (20) (2022)
Minoru Kusaba, Chang Liu, Ryo Yoshida
Crystal structure prediction with machine learning-based element substitution. CoRR (2022)
Shunya Minami, Song Liu, Stephen Wu, Kenji Fukumizu, Ryo Yoshida
A General Class of Transfer Learning Regression without Implementation Cost. AAAI (2021)
Tatsuki Kuribayashi, Yohei Oseki, Takumi Ito, Ryo Yoshida, Masayuki Asahara, Kentaro Inui
Lower Perplexity is Not Always Human-Like. CoRR (2021)
Tatsuki Kuribayashi, Yohei Oseki, Takumi Ito, Ryo Yoshida, Masayuki Asahara, Kentaro Inui
Lower Perplexity is Not Always Human-Like. ACL/IJCNLP (1) (2021)
Ryo Yoshida, Hiroshi Noji, Yohei Oseki
Modeling Human Sentence Processing with Left-Corner Recurrent Neural Network Grammars. EMNLP (1) (2021)
Ryo Yoshida, Hiroshi Noji, Yohei Oseki
Modeling Human Sentence Processing with Left-Corner Recurrent Neural Network Grammars. CoRR (2021)
Shunya Minami, Song Liu, Stephen Wu, Kenji Fukumizu, Ryo Yoshida
A General Class of Transfer Learning Regression without Implementation Cost. CoRR (2020)
Zhongliang Guo, Stephen Wu, Mitsuru Ohno, Ryo Yoshida
A Bayesian algorithm for retrosynthesis. CoRR (2020)
Zhongliang Guo, Stephen Wu, Mitsuru Ohno, Ryo Yoshida
Bayesian Algorithm for Retrosynthesis. J. Chem. Inf. Model. 60 (10) (2020)
Yumi Kawamura, Shinsuke Koyama, Ryo Yoshida
Statistical inference of the rate of RNA polymerase II elongation by total RNA sequencing. Bioinform. 35 (11) (2019)
Minoru Kusaba, Chang Liu, Yukinori Koyama, Kiyoyuki Terakura, Ryo Yoshida
Recreation of the Periodic Table with an Unsupervised Machine Learning Algorithm. CoRR (2019)
Osamu Hirose, Shotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Hisaki Ikebata, Kenta Hongo, Tetsu Isomura, Ryo Maezono, Ryo Yoshida
Bayesian molecular design with a chemical language model. J. Comput. Aided Mol. Des. 31 (4) (2017)
Yu Toyoshima, Terumasa Tokunaga, Osamu Hirose, Manami Kanamori, Takayuki Teramoto, Moon Sun Jang, Sayuri Kuge, Takeshi Ishihara, Ryo Yoshida, Yuichi Iino
Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space. PLoS Comput. Biol. 12 (6) (2016)
Hisaki Ikebata, Ryo Yoshida
Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence sets. Bioinform. 31 (10) (2015)
Osamu Hirose, Shotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter. CoRR (2015)
Hiroshi Yamashita, Tomoyuki Higuchi, Ryo Yoshida
Atom Environment Kernels on Molecules. J. Chem. Inf. Model. 54 (5) (2014)
Terumasa Tokunaga, Osamu Hirose, Shotaro Kawaguchi, Yu Toyoshima, Takayuki Teramoto, Hisaki Ikebata, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
Automated detection and tracking of many cells by using 4D live-cell imaging data. Bioinform. 30 (12) (2014)
Ryo Yoshida
Self-oscillating polymer gels as novel biomimetic materials. EMBC (2013)
Tatsuya Ishikawa, Ryo Yoshida, Keita Takahashi, Hiroshi Inoue, Akira Kobayashi
A study on EGG affected by viscosity and shear rate dependence of fluid and semi-solid diets. EMBC (2013)
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Yoshinori Tamada, Rui Yamaguchi, Seiya Imoto, Osamu Hirose, Ryo Yoshida, Masao Nagasaki, Satoru Miyano
SiGN-SSM: open source parallel software for estimating gene networks with state space models. Bioinform. 27 (8) (2011)
Ryo Yoshida, Mike West
Bayesian Learning in Sparse Graphical Factor Models via Variational Mean-Field Annealing. J. Mach. Learn. Res. 11 (2010)
Keisuke Hayashi, Masaya M. Saito, Ryo Yoshida, Tomoyuki Higuchi
Implementation of Sequential Importance Sampling in GPGPU. FUSION (2010)
Ryo Yoshida
Design of Self-Oscillating Gels and Application to Biomimetic Actuators. Sensors 10 (3) (2010)
Ryo Yoshida, Masaya M. Saito, Hiromichi Nagao, Tomoyuki Higuchi
Bayesian experts in exploring reaction kinetics of transcription circuits. Bioinform. 26 (18) (2010)
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning. BIBM (2010)
Kazuyuki Nakamura, Ryo Yoshida, Masao Nagasaki, Satoru Miyano, Tomoyuki Higuchi
Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing. Pacific Symposium on Biocomputing (2009)
Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto
Chemical robot-design of peristaltic polymer gel actuator-. IROS (2009)
Yusuke Hara, Shingo Maeda, Ryo Yoshida, Shuji Hashimoto
Development of novel self-oscillating molecular robot fueled by organic acid. IROS (2009)
Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi
Bayesian learning of biological pathways on genomic data assimilation. Bioinform. 24 (22) (2008)
Osamu Hirose, Ryo Yoshida, Rui Yamaguchi, Seiya Imoto, Tomoyuki Higuchi, Satoru Miyano
Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models. Asia International Conference on Modelling and Simulation (2008)
Osamu Hirose, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Tomoyuki Higuchi, Stephen D. Charnock-Jones, Cristin G. Print, Satoru Miyano
Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models. Bioinform. 24 (7) (2008)
Ryo Yoshida, Michiaki Yasumura
A New Cell Phone Remote Control for People with Visual Impairment. ICCHP (2008)
Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto
Self-Oscillating Gel Actuator for Chemical Robotics. Adv. Robotics 22 (12) (2008)
Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano
ExonMiner: Web service for analysis of GeneChip Exon array data. BMC Bioinform. 9 (2008)
Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto
Chemical robot - Design of self-walking gel. IROS (2007)
Pramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano
Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data. ISBRA (2007)
Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano
Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles. BIBE (2007)
Rui Yamaguchi, Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi, Satoru Miyano
Finding module-based gene networks with state-space models - Mining high-dimensional and short time-course gene expression data. IEEE Signal Process. Mag. 24 (1) (2007)
Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto, Satoru Miyano
ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles. Bioinform. 22 (12) (2006)
Michiaki Yasumura, Ryo Yoshida, Megumi Yoshida
Prototyping and Evaluation of New Remote Controls for People with Visual Impairment. ICCHP (2006)
Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi
Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching. CSB (2005)
Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi
A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering. ICCSA (3) (2005)
Shingo Maeda, Shuji Hashimoto, Ryo Yoshida
Design of chemo-mechanical actuator using self-oscillating gel. ROBIO (2004)
Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto
A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data. CSB (2004)
Ryo Yoshida, Takaaki Murao, Tatsuo Miyazawa
3D web environment for knowledge management. Future Gener. Comput. Syst. 17 (1) (2000)
Ryo Yoshida, Carmine F. Greco
Reactive Virtual Environment System: LivingWorlds multi-user world. EGVE (1998)
Ryutarou Ohbuchi, Tatsuo Miyazawa, Masaki Aono, Akio Koide, Masahiko Kimura, Ryo Yoshida
Integrated medical-image system for cancer research and treatment. IBM J. Res. Dev. 40 (2) (1996)
Ryo Yoshida, Tatsuo Miyazawa, Akio Doi, Taisuke Otsuki
Clinical planning support system-CliPSS. IEEE Computer Graphics and Applications 13 (6) (1993)