Repulsive parallel MCMC algorithm for discovering diverse motifs from large sequence sets.
Hisaki IkebataRyo YoshidaPublished in: Bioinform. (2015)
Keyphrases
- input data
- parallel implementation
- monte carlo
- computational complexity
- simulated annealing
- learning algorithm
- objective function
- preprocessing
- expectation maximization
- np hard
- dynamic programming
- probabilistic model
- cost function
- similarity measure
- least squares
- genetic algorithm
- lower bound
- segmentation algorithm
- detection algorithm
- bayesian networks
- sampling algorithm
- motif discovery