Arif Canakoglu

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 32

Top Topics

Data Integration

Conceptual Modeling

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023)
Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38 (7) (2022)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Pietro Crovari, Sara Pidò, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Franca Garzotto, Stefano Ceri
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. ACM Trans. Comput. Heal. 3 (1) (2022)
Tommaso Alfonsi, Anna Bernasconi, Arif Canakoglu, Marco Masseroli
Genomic data integration and user-defined sample-set extraction for population variant analysis. BMC Bioinform. 23 (1) (2022)
Anna Bernasconi, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. Database J. Biol. Databases Curation 2021 (2021)
Arif Canakoglu, Pietro Pinoli, Anna Bernasconi, Tommaso Alfonsi, Damianos P. Melidis, Stefano Ceri
ViruSurf: an integrated database to investigate viral sequences. Nucleic Acids Res. 49 (Database-Issue) (2021)
Amirreza Rouhi, Luca Nanni, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis. ICBBT (2021)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
The road towards data integration in human genomics: players, steps and interactions. Briefings Bioinform. 22 (1) (2021)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri
A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings Bioinform. 22 (2) (2021)
Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri
Federated sharing and processing of genomic datasets for tertiary data analysis. Briefings Bioinform. 22 (3) (2021)
Giuseppe Cannizzaro, Michele Leone, Anna Bernasconi, Arif Canakoglu, Mark J. Carman
Automated Integration of Genomic Metadata with Sequence-to-Sequence Models. ECML/PKDD (5) (2020)
Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
Empowering Virus Sequence Research Through Conceptual Modeling. ER (2020)
Andrea Gulino, Arif Canakoglu, Stefano Ceri, Danilo Ardagna
Performance Prediction for Data-driven Workflows on Apache Spark. MASCOTS (2020)
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets. BMC Bioinform. 20 (1) (2019)
Anna Bernasconi, Arif Canakoglu, Stefano Ceri
Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study. ER Workshops (2019)
Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. CIBB (2019)
Anna Bernasconi, Arif Canakoglu, Stefano Ceri
From a Conceptual Model to a Knowledge Graph for Genomic Datasets. ER (2019)
Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. Bioinform. 35 (5) (2019)
Andrea Gulino, Eirini Stamoulakatou, Arif Canakoglu, Pietro Pinoli
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types. BIBM (2019)
Arif Canakoglu, Anna Bernasconi, Andrea Colombo, Marco Masseroli, Stefano Ceri
GenoSurf: metadata driven semantic search system for integrated genomic datasets. Database J. Biol. Databases Curation 2019 (2019)
Arif Canakoglu, Luca Nanni, Artur Sokolovsky, Stefano Ceri
Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data. CIBB (2018)
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
Exploring Genomic Datasets: from Batch to Interactive and Back. ExploreDB@SIGMOD/PODS (2018)
Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Demonstration of GenoMetric Query Language. CIKM (2018)
Guray Golcuk, Mustafa Anil Tuncel, Arif Canakoglu
Exploiting Ladder Networks for Gene Expression Classification. IWBBIO (1) (2018)
Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri
Ontology-driven metadata enrichment for genomic datasets. SWAT4LS (2018)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Data-Driven Genomic Computing: Making sense of Signals from the Genome. DAMDID/RCDL (2017)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Experiences in the Development of a Data Management System for Genomics. DATA (Revised Selected Papers) (2017)
Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. DAMDID/RCDL (Selected Papers) (2017)
Arif Canakoglu, Stefano Ceri, Marco Masseroli
Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge. IWBBIO (2016)
Marco Masseroli, Arif Canakoglu, Stefano Ceri
Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (2) (2016)
Arif Canakoglu, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. BIBE (2013)
Arif Canakoglu, Giorgio Ghisalberti, Marco Masseroli
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery. CIBB (2011)