Xi Yang

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 37

Top Topics

Natural Language Processing

Relation Extraction

Diabetic Retinopathy

Cancer Patients

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Cheng Peng, Xi Yang, Kaleb E. Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu
Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction. J. Biomed. Informatics 153 (2024)
Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias. J. Biomed. Informatics 153 (2024)
Shuang Yang, Xi Yang, Tianchen Lyu, James L. Huang, Aokun Chen, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yonghui Wu, Yi Guo, Jiang Bian
Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports of Lung Cancer Screening Patients Using Transformer Models. J. Heal. Informatics Res. 8 (3) (2024)
Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia C. F. Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias. Int. J. Medical Informatics 170 (2023)
Aokun Chen, Zehao Yu, Xi Yang, Yi Guo, Jiang Bian, Yonghui Wu
Contextualized Medication Information Extraction Using Transformer-based Deep Learning Architectures. CoRR (2023)
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
Clinical Concept and Relation Extraction Using Prompt-based Machine Reading Comprehension. CoRR (2023)
Cheng Peng, Xi Yang, Zehao Yu, Jiang Bian, William R. Hogan, Yonghui Wu
Clinical concept and relation extraction using prompt-based machine reading comprehension. J. Am. Medical Informatics Assoc. 30 (9) (2023)
Cheng Peng, Xi Yang, Aokun Chen, Kaleb E. Smith, Nima M. Pournejatian, Anthony B. Costa, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Gloria P. Lipori, Duane A. Mitchell, Naykky Singh Ospina, Mustafa M. Ahmed, William R. Hogan, Elizabeth A. Shenkman, Yi Guo, Jiang Bian, Yonghui Wu
A study of generative large language model for medical research and healthcare. npj Digit. Medicine 6 (2023)
Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu
Identify diabetic retinopathy-related clinical concepts and their attributes using transformer-based natural language processing methods. BMC Medical Informatics Decis. Mak. (3) (2022)
Xi Yang, Aokun Chen, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Anthony B. Costa, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
A large language model for electronic health records. npj Digit. Medicine 5 (2022)
Xi Yang, Nima M. Pournejatian, Hoo Chang Shin, Kaleb E. Smith, Christopher Parisien, Colin Compas, Cheryl Martin, Mona G. Flores, Ying Zhang, Tanja Magoc, Christopher A. Harle, Gloria P. Lipori, Duane A. Mitchell, William R. Hogan, Elizabeth A. Shenkman, Jiang Bian, Yonghui Wu
GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records. CoRR (2022)
Shuang Yang, Xi Yang, Tianchen Lyu, Xing He, Dejana Braithwaite, Hiren J. Mehta, Yi Guo, Yonghui Wu, Jiang Bian
A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing. ICHI (2022)
Zehao Yu, Xi Yang, Yiqing Chen, Ruogu Fang, William R. Hogan, Yan Gong, Yonghui Wu
Identify Cancer Patients at Risk for Heart Failure using Electronic Health Record and Genetic Data. ICHI (2022)
Zehao Yu, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
SODA: A Natural Language Processing Package to Extract Social Determinants of Health for Cancer Studies. CoRR (2022)
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. CoRR (2021)
Shubo Tian, Arslan Erdengasileng, Xi Yang, Yi Guo, Yonghui Wu, Jinfeng Zhang, Jiang Bian, Zhe He
Transformer-based named entity recognition for parsing clinical trial eligibility criteria. BCB (2021)
Zehao Yu, Xi Yang, Chong Dang, Songzi Wu, Prakash Adekkanattu, Jyotishman Pathak, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models. AMIA (2021)
Xi Yang, Zehao Yu, Yi Guo, Jiang Bian, Yonghui Wu
Clinical Relation Extraction Using Transformer-based Models. CoRR (2021)
Hansi Zhang, Xi Yang, Thomas J. George, William R. Hogan, Jiang Bian, Yonghui Wu
Developing an Ontology for Social and Behavioral Determinants of Health. AMIA (2021)
Zehao Yu, Xi Yang, Gianna L. Sweeting, Yinghan Ma, Skylar E. Stolte, Ruogu Fang, Yonghui Wu
Identify Diabetic Retinopathy-related Clinical Concepts Using Transformer-based Natural Language Processing Methods. ICHI (2021)
Braja Gopal Patra, Mohit M. Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu, Xi Yang, Jiang Bian, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
Extracting social determinants of health from electronic health records using natural language processing: a systematic review. J. Am. Medical Informatics Assoc. 28 (12) (2021)
Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Xi Yang, Hanyuan Yang, Tianchen Lyu, Shuang Yang, Yi Guo, Jiang Bian, Hua Xu, Yonghui Wu
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives. ICHI (2020)
Yi Guo, Xing He, Tianchen Lyu, Hansi Zhang, Yonghui Wu, Xi Yang, Zhaoyi Chen, Merry J. Markham, François Modave, Mengjun Xie, William R. Hogan, Christopher A. Harle, Elizabeth Shenkman, Jiang Bian
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups. AMIA (2020)
Xi Yang, Jiang Bian, William R. Hogan, Yonghui Wu
Clinical concept extraction using transformers. J. Am. Medical Informatics Assoc. 27 (12) (2020)
Yunpeng Zhao, Yi Guo, Xing He, Yonghui Wu, Xi Yang, Mattia C. F. Prosperi, Yanghua Jin, Jiang Bian
Assessing mental health signals among sexual and gender minorities using Twitter data. Health Informatics J. 26 (2) (2020)
Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia C. F. Prosperi, Jinhai Huo, Jordan Alpert, Jiang Bian
ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design. BMC Medical Informatics Decis. Mak. (4) (2019)
Xi Yang, Tianchen Lyu, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings. ICHI (2019)
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods. CoRR (2019)
Xing He, Hansi Zhang, Xi Yang, Yi Guo, Jiang Bian
STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base. ICHI (2019)
Xi Yang, Yan Gong, Nida Waheed, Keith March, Jiang Bian, William R. Hogan, Yonghui Wu
Identifying Cancer Patients at Risk for Heart Failure Using Machine Learning Methods. AMIA (2019)
Xi Yang, Tianchen Lyu, Qian Li, Chih-Yin Lee, Jiang Bian, William R. Hogan, Yonghui Wu
A study of deep learning methods for de-identification of clinical notes in cross-institute settings. BMC Medical Informatics Decis. Mak. (5) (2019)
Xi Yang, Jiang Bian, Yonghui Wu
Detecting Medications and Adverse Drug Events in Clinical Notes Using Recurrent Neural Networks. Medication and Adverse Drug Event Detection (2018)
Xing He, Rui Zhang, Rubina F. Rizvi, Jake Vasilakes, Xi Yang, Yi Guo, Zhe He, Mattia C. F. Prosperi, Jiang Bian
Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph. BIBM (2018)
Yunpeng Zhao, Yi Guo, Xing He, Jinhai Huo, Yonghui Wu, Xi Yang, Jiang Bian
Assessing Mental Health Signals Among Sexual and Gender Minorities using Twitter Data. ICHI Workshops (2018)
Yonghui Wu, Xi Yang, Jiang Bian, Yi Guo, Hua Xu, William R. Hogan
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition. AMIA (2018)
Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian
OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system. BMC Medical Informatics Decis. Mak. 18 (S-2) (2018)