Yuqi Si

Publication Activity (10 Years)

Years Active: 2017-2021
Publications (10 Years): 20

Top Topics

Relation Extraction

Electronic Health Records

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Yuqi Si, Kirk Roberts
Hierarchical Transformer Networks for Longitudinal Clinical Document Classification. CoRR (2021)
Yifan Zuo, Huan Chen, Jincheng Pan, Yuqi Si, Rob Law, Mu Zhang
Spatial Distribution Pattern and Influencing Factors of Sports Tourism Resources in China. ISPRS Int. J. Geo Inf. 10 (7) (2021)
Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Yuqi Si, Elmer V. Bernstam, Kirk Roberts
Generalized and transferable patient language representation for phenotyping with limited data. J. Biomed. Informatics 116 (2021)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics 115 (2021)
Yuqi Si, Elmer V. Bernstam, Kirk Roberts
Generalized and Transferable Patient Language Representation for Phenotyping with Limited Data. CoRR (2021)
Timothy A. Miller, Dmitriy Dligach, Fei Wang, Yuqi Si, Funda Meric-Bernstam
Learning Patient Representations from Electronic Health Records across Diverse Data Types. AMIA (2020)
Nicholas Greenspan, Yuqi Si, Kirk Roberts
Extracting Concepts for Precision Oncology from the Biomedical Literature. CoRR (2020)
Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts
Understanding spatial language in radiology: Representation framework, annotation, and spatial relation extraction from chest X-ray reports using deep learning. J. Biomed. Informatics 108 (2020)
Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu
Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR (2020)
Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu
Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA (2019)
Yang Xiang, Jun Xu, Yuqi Si, Zhiheng Li, Laila Rasmy, Yujia Zhou, Firat Tiryaki, Fang Li, Yaoyun Zhang, Yonghui Wu, Xiaoqian Jiang, W. Jim Zheng, Degui Zhi, Cui Tao, Hua Xu
Time-sensitive clinical concept embeddings learned from large electronic health records. BMC Medical Informatics Decis. Mak. (2) (2019)
Surabhi Datta, Yuqi Si, Laritza Rodriguez, Sonya E. Shooshan, Dina Demner-Fushman, Kirk Roberts
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning. CoRR (2019)
Yuqi Si, Jingqi Wang, Hua Xu, Kirk Roberts
Enhancing Clinical Concept Extraction with Contextual Embedding. CoRR (2019)
Yuqi Si, Jingqi Wang, Hua Xu, Kirk E. Roberts
Enhancing clinical concept extraction with contextual embeddings. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Kirk Roberts, Yuqi Si, Anshul Gandhi, Elmer V. Bernstam
A FrameNet for Cancer Information in Clinical Narratives: Schema and Annotation. LREC (2018)
Yuqi Si, Kirk E. Roberts
A Frame-Based NLP System for Cancer-Related Information Extraction. AMIA (2018)
Yuqi Si, Chunhua Weng
An OMOP CDM-Based Relational Database of Clinical Research Eligibility Criteria. MedInfo (2017)