Clément Jonquet

ORCID

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 55

Top Venues

Data Sci. J.

CoRR

SWAT4LS

Montpellier 2 University, France (PHD)

Education History

Montpellier 2 University, France

PHD

Publications

Clément Jonquet, María Poveda-Villalón
About versioning ontologies or any digital objects with clear semantics. DaMaLOS (2023)
Óscar Corcho, Fajar J. Ekaputra, Ivan Heibi, Clément Jonquet, András Micsik, Silvio Peroni, Emanuele Storti
A maturity model for catalogues of semantic artefacts. CoRR (2023)
Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa
Correction: 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. Data Sci. J. 22 (2023)
Clément Jonquet, John Graybeal, Syphax Bouazzouni, Michael Dorf, Nicola Fiore, Xeni Kechagioglou, Timothy Redmond, Ilaria Rosati, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen
Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology. ISWC (2023)
Raphaël Conde Salazar, Clément Jonquet, Danai Symeonidou
Classification of Linking Problem Types for Linking Semantic Data. SEMANTiCS (2023)
Emna Amdouni, Arkopaul Sarkar, Clément Jonquet, Mohamed-Hedi Karray
IndustryPortal: a Common Repository for FAIR Ontologies in Industry 4.0. ISWC (Posters/Demos/Industry) (2023)
Clément Jonquet, Biswanath Dutta, Luiz Olavo Bonino da Silva Santos, Robert Pergl, Yann Le Franc
Common Minimum Metadata for FAIR Semantic Artefacts. Onto4FAIR (2023)
Baptiste Darnala, Florence Amardeilh, Catherine Roussey, Konstantin Todorov, Clément Jonquet
Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages. TEXT2KG/MK@ESWC (2022)
Emna Amdouni, Syphax Bouazzouni, Clément Jonquet
O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal Semantic Resource Repository. ESWC (Satellite Events) (2022)
Emna Amdouni, Syphax Bouazzouni, Clément Jonquet
O'FAIRe makes you an offer: metadata-based automatic FAIRness assessment for ontologies and semantic resources. Int. J. Metadata Semant. Ontologies 16 (1) (2022)
Mehdi Mirzapour, Amine Abdaoui, Andon Tchechmedjiev, William Digan, Sandra Bringay, Clément Jonquet
French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes. J. Biomed. Informatics 117 (2021)
Baptiste Darnala, Florence Amardeilh, Catherine Roussey, Clément Jonquet
Crop Planning and Production Process Ontology (C3PO), a New Model to Assist Diversified Crop Production. JOWO (2021)
Emna Amdouni, Clément Jonquet
FAIR or FAIRer? An Integrated Quantitative FAIRness Assessment Grid for Semantic Resources and Ontologies. MTSR (2021)
Emna Amdouni, Clément Jonquet
Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal. IC (2021)
Catherine Roussey, Xavier Delpuech, Marc Raynal, Florence Amardheil, Stephan Bernard, Clément Jonquet
Description sémantique des stades de développement phénologique des plantes cas d'étude de la vigne. IC (2021)
Syphax Bouazzouni, Clément Jonquet
L'ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France. IC (2021)
Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. Data Sci. J. 19 (2020)
Mina Abd Nikooie Pour, Alsayed Algergawy, Reihaneh Amini, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Clément Jonquet, Naouel Karam, Abderrahmane Khiat, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Pascal Hitzler, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou
Results of the Ontology Alignment Evaluation Initiative 2020. OM@ISWC (2020)
Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. CoRR (2020)
Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, Mohamed Yahia, Clément Jonquet, Laurent Dollé, Daniel Jacob, Daniele Bailo, Elena Bravo, Sophie Gachet, Hannah Gunderman, Jean-Eudes Hollebecq, Vassilios Ioannidis, Yvan Le Bras, Emilie Lerigoleur, Anne Cambon-Thomsen
FAIRness Literacy: The Achilles' Heel of Applying FAIR Principles. Data Sci. J. 19 (2020)
Amir Laadhar, Élcio Abrahão, Clément Jonquet
Investigating One Million XRefs in Thirthy Ontologies from the OBO World. ICBO/ODLS (2020)
Catherine Roussey, Xavier Delpuech, Florence Amardeilh, Stephan Bernard, Clément Jonquet
Semantic Description of Plant Phenological Development Stages, Starting with Grapevine. MTSR (2020)
Amir Laadhar, Élcio Abrahão, Clément Jonquet
Analysis of Term Reuse, Term Overlap and Extracted Mappings Across AgroPortal Semantic Resources. EKAW (2020)
Sophie Aubin, Pierre Bisquert, Patrice Buche, Juliette Dibie, Liliana Ibanescu, Clément Jonquet, Catherine Roussey
Recent progresses in data and knowledge integration for decision support in agri-food chains. IC (2019)
Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. BMC Bioinform. (4) (2019)
Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clément Jonquet
SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes. BMC Bioinform. 19 (1) (2018)
Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clément Jonquet
Building an effective and efficient background knowledge resource to enhance ontology matching. J. Web Semant. 51 (2018)
Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew Farmer, Stephen P. Ficklin, David Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018 (2018)
Fabienne Kettani, Stéphane Schneider, Sophie Aubin, Robert Bossy, Claire François, Clément Jonquet, Andon Tchechmedjiev, Anne Toulet, Claire Nédellec
Projet VisaTM : l'interconnexion OpenMinTeD - AgroPortal - ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français. IC (2018)
Philippe Lemoisson, Guillaume Surroca, Clément Jonquet, Stefano A. Cerri
ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph. Int. J. Knowl. Learn. 12 (2) (2018)
Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande
AgroPortal: A vocabulary and ontology repository for agronomy. Comput. Electron. Agric. 144 (2018)
Clément Jonquet, Anne Toulet, Biswanath Dutta, Vincent Emonet
Harnessing the Power of Unified Metadata in an Ontology Repository: The Case of AgroPortal. J. Data Semant. 7 (4) (2018)
Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, Clément Jonquet
Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+. Bioinform. 34 (11) (2018)
Juan Antonio Lossio-Ventura, Jiang Bian, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
A novel framework for biomedical entity sense induction. J. Biomed. Informatics 84 (2018)
Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. J. Biomed. Semant. 8 (1) (2017)
Biswanath Dutta, Anne Toulet, Vincent Emonet, Clément Jonquet
New Generation Metadata Vocabulary for Ontology Description and Publication. MTSR (2017)
Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Clément Jonquet
ICD10 Coding of Death Certificates with the NCBO and SIFR Annotator(s) at CLEF eHealth 2017 Task 1. CLEF (Working Notes) (2017)
Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clément Jonquet
YAM-BIO: results for OAEI 2017. OM@ISWC (2017)
Pierre Monnin, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. PeerJ Prepr. 5 (2017)
Clément Jonquet
Challenges for Ontology Repositories and Applications to Biomedicine & Agronomy. SIMBig (2017)
Philippe Lemoisson, Guillaume Surroca, Clément Jonquet, Stefano Alessandro Cerri
ViewpointS: When Social Ranking Meets the Semantic Web. FLAIRS Conference (2017)
Guillaume Surroca, Philippe Lemoisson, Clément Jonquet, Stefano A. Cerri
Subjective and generic distance in ViewpointS: an experiment on WordNet. WIMS (2016)
Juan Antonio Lossio-Ventura, Mathieu Roche, Clément Jonquet, Maguelonne Teisseire
A Way to Automatically Enrich Biomedical Ontologies. EDBT (2016)
Amina Annane, Vincent Emonet, Faiçal Azouaou, Clément Jonquet
Multilingual Mapping Reconciliation between English-French Biomedical Ontologies. WIMS (2016)
Amina Annane, Vincent Emonet, Faiçal Azouaou, Clément Jonquet
Réconciliation d'alignements multi-lingues dans BioPortal. IC (2016)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Biomedical term extraction: overview and a new methodology. Inf. Retr. J. 19 (1-2) (2016)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Automatic Biomedical Term Polysemy Detection. LREC (2016)
Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen
NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation. CoRR (2016)
Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clément Jonquet
Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching. EKAW (2016)
Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. ICBO/BioCreative (2016)
Solène Eholié, Mike Donald Tapi-Nzali, Sandra Bringay, Clément Jonquet
MuEVo, a Breast Cancer Consumer Health Vocabulary Built Out of Web Forums. SWAT4LS (2016)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Prédiction de la polysémie pour un terme biomédical. CORIA (2015)
Clément Jonquet, Vincent Emonet, Mark A. Musen
Roadmap for a Multilingual BioPortal. MSW@ESWC (2015)
Guillaume Surroca, Philippe Lemoisson, Clément Jonquet, Stefano A. Cerri
Diffusion de systèmes de préférence par confrontation de points de vue, vers une simulation de la Sérendipité. IC (2015)
Guillaume Surroca, Philippe Lemoisson, Clément Jonquet, Stefano A. Cerri
Preference Dissemination by Sharing Viewpoints. KEOD (2015)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation. ISWC (Posters & Demos) (2014)
Julien Grosjean, Lina Fatima Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan Jacques Darmoni
Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal ? IWBBIO (2014)
Julien Grosjean, Lina Fatima Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan Jacques Darmoni
An Approach to Compare Bio-Ontologies Portals. MIE (2014)
Guillaume Surroca, Philippe Lemoisson, Clément Jonquet, Stefano A. Cerri
Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique. IC (2014)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Yet Another Ranking Function for Automatic Multiword Term Extraction. PolTAL (2014)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
SIFR Project: The Semantic Indexing of French Biomedical Data Resources. SIMBig (2014)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Towards a Mixed Approach to Extract Biomedical Terms from Text Corpus. Int. J. Knowl. Discov. Bioinform. 4 (1) (2014)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Automatic Term Extraction Combining Different Information (Extraction automatique de termes combinant différentes informations) [in French]. TALN (2) (2014)
Soumia Melzi, Clément Jonquet
Scoring Semantic Annotations Returned by The NCBO Annotator. SWAT4LS (2014)
Soumia Melzi, Clément Jonquet
Representing NCBO Annotator Results in Standard RDF with the Annotation Ontology. SWAT4LS (2014)
Juan Antonio Lossio-Ventura, Clément Jonquet, Mathieu Roche, Maguelonne Teisseire
Integration of linguistic and web information to improve biomedical terminology extraction. IDEAS (2014)
Su White, Madalina Croitoru, Stéphane B. Bazan, Stefano A. Cerri, Hugh C. Davis, Raffaella Folgieri, Clément Jonquet, François Scharffe, Steffen Staab, Thanassis Tiropanis, Michalis Vafopoulos
Negotiating the web science curriculum through shared educational artefacts. WebSci (2011)
Clément Jonquet, Paea LePendu, Sean M. Falconer, Adrien Coulet, Natalya Fridman Noy, Mark A. Musen, Nigam H. Shah
NCBO Resource Index: Ontology-based search and mining of biomedical resources. J. Web Semant. 9 (3) (2011)
Patricia L. Whetzel, Clément Jonquet, Cherie Youn, Michael Dorf, Ray W. Fergerson, Mark A. Musen, Nigam Shah
The NCBO Annotator: Ontology-Based Annotation as a Web Service. ICBO (2011)
Paea LePendu, Natalya Fridman Noy, Clément Jonquet, Paul R. Alexander, Nigam H. Shah, Mark A. Musen
Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases. ISWC (1) (2010)
Christophe Roeder, Clément Jonquet, Nigam H. Shah, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter
A UIMA wrapper for the NCBO annotator. Bioinform. 26 (14) (2010)
Clément Jonquet, Adrien Coulet, Nigam H. Shah, Mark A. Musen
Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical. IC (2010)
Clément Jonquet, Mark A. Musen, Nigam H. Shah
Building a biomedical ontology recommender web service. J. Biomed. Semant. 1 (S-1) (2010)
Amir Ghazvinian, Natalya Fridman Noy, Clément Jonquet, Nigam H. Shah, Mark A. Musen
What Four Million Mappings Can Tell You about Two Hundred Ontologies. ISWC (2009)
Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clément Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen
BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen
Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinform. 10 (S-2) (2009)
Nigam H. Shah, Nipun Bhatia, Clément Jonquet, Daniel L. Rubin, Annie P. Chiang, Mark A. Musen
Comparison of concept recognizers for building the Open Biomedical Annotator. BMC Bioinform. 10 (S-9) (2009)
Clément Jonquet, Stefano A. Cerri
Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication CoRR (2008)
Pascal Dugenie, Clément Jonquet, Stefano A. Cerri
The Principle of Immanence in GRID-Multiagent Integrated Systems. OTM Workshops (2008)
Natalya Fridman Noy, Nigam Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clément Jonquet, Michael Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen
BioPortal: A Web Repository for Biomedical Ontologies and Data Resources. ISWC (Posters & Demos) (2008)
Clément Jonquet, Mark A. Musen, Nigam Shah
A System for Ontology-Based Annotation of Biomedical Data. DILS (2008)
Clément Jonquet, Pascal Dugenie, Stefano A. Cerri
Agent-Grid Integration Language. Multiagent Grid Syst. 4 (2) (2008)
Clément Jonquet, Pascal Dugenie, Stefano A. Cerri
Service-Based Integration of Grid and Multi-Agent Systems Models. SOCASE (2008)
Clément Jonquet, Pascal Dugenie, Stefano A. Cerri
Intégration orientée service des modèles Grid et Multi-Agents. JFSMA (2006)
Frédéric Duvert, Clément Jonquet, Pascal Dugenie, Stefano A. Cerri
Agent-Grid Integration Ontology. OTM Workshops (1) (2006)
Clément Jonquet, Stefano A. Cerri
The Strobe Model: Dynamic Service Generation on the Grid. Appl. Artif. Intell. 19 (9-10) (2005)
Stefano A. Cerri, Clément Jonquet
Apprentissage issu de la communication pour des agents cognitifs. Tech. Sci. Informatiques 22 (4) (2003)
Stefano A. Cerri, Marc Eisenstadt, Clément Jonquet
Dynamic Learning Agents and Enhanced Presence on the Grid. LeGE-WG 3 (2003)

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Publication Activity (10 Years)

Top Topics

Top Venues

Clément Jonquet