Berend Snel

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 3

Top Topics

Gene Prediction

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Samuel H. A. von der Dunk, Paulien Hogeweg, Berend Snel
Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis. PLoS Comput. Biol. 20 (2) (2024)
Eva S. Deutekom, Berend Snel, Teunis J. P. van Dam
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes. Briefings Bioinform. 22 (3) (2021)
Eva S. Deutekom, Julian Vosseberg, Teunis J. P. van Dam, Berend Snel
Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences. PLoS Comput. Biol. 15 (8) (2019)
Adrian Schneider, Michael F. Seidl, Berend Snel
Shared Protein Complex Subunits Contribute to Explaining Disrupted Co-occurrence. PLoS Comput. Biol. 9 (7) (2013)
Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst, Berend Snel
Enrichment of homologs in insignificant BLAST hits by co-complex network alignment. BMC Bioinform. 11 (2010)
Like Fokkens, Berend Snel
Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes. PLoS Comput. Biol. 5 (1) (2009)
Teunis J. P. van Dam, Berend Snel
Protein Complex Evolution Does Not Involve Extensive Network Rewiring. PLoS Comput. Biol. 4 (7) (2008)
René T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen
Orthology prediction at scalable resolution by phylogenetic tree analysis. BMC Bioinform. 8 (2007)
Jos Boekhorst, Berend Snel
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. BMC Bioinform. 8 (2007)
Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork
STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35 (Database-Issue) (2007)
Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen
Assessment of phylogenomic and orthology approaches for phylogenetic inference. Bioinform. 23 (7) (2007)
Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33 (Database-Issue) (2005)
Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel
STRING: a database of predicted functional associations between proteins. Nucleic Acids Res. 31 (1) (2003)