Guixia Liu

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 63

Top Topics

Image Registration

Protein Complexes

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

J. Cheminformatics

Publications

Mingrui Ma, Tao Wang, Weijie Wang, Guixia Liu
Weighted window attention and recover feature resolution-based network for deformable abdominal image registration. Biomed. Signal Process. Control. 95 (2024)
Yaxin Gu, Yimeng Wang, Keyun Zhu, Weihua Li, Guixia Liu, Yun Tang
DBPP-Predictor: a novel strategy for prediction of chemical drug-likeness based on property profiles. J. Cheminformatics 16 (1) (2024)
Yimeng Wang, Xinxin Yu, Yaxin Gu, Weihua Li, Keyun Zhu, Long Chen, Yun Tang, Guixia Liu
XGraphCDS: An explainable deep learning model for predicting drug sensitivity from gene pathways and chemical structures. Comput. Biol. Medicine 168 (2024)
Ji Lv, Guixia Liu, Yuan Ju, Houhou Huang, Ying Sun
Measuring drug similarity using drug-drug interactions. Quant. Biol. 12 (2) (2024)
Keyun Zhu, Mengting Huang, Yimeng Wang, Yaxin Gu, Weihua Li, Guixia Liu, Yun Tang
prediction of drug metabolites based on deep language models with prompt engineering. Briefings Bioinform. 25 (5) (2024)
Yanjun Feng, Changda Gong, Jieyu Zhu, Guixia Liu, Yun Tang, Weihua Li
Unraveling the Ligand-Binding Sites of CYP3A4 by Molecular Dynamics Simulations with Solvent Probes. J. Chem. Inf. Model. 64 (8) (2024)
Zhuohang Yu, Zengrui Wu, Ze Wang, Yimeng Wang, Moran Zhou, Weihua Li, Guixia Liu, Yun Tang
Network-Based Methods and Their Applications in Drug Discovery. J. Chem. Inf. Model. 64 (1) (2024)
Zhuohang Yu, Zengrui Wu, Moran Zhou, Long Chen, Weihua Li, Guixia Liu, Yun Tang
mtADENet: A novel interpretable method integrating multiple types of network-based inference approaches for prediction of adverse drug events. Comput. Biol. Medicine 168 (2024)
Yanjun Feng, Changda Gong, Jieyu Zhu, Guixia Liu, Yun Tang, Weihua Li
Prediction of Sites of Metabolism of CYP3A4 Substrates Utilizing Docking-Derived Geometric Features. J. Chem. Inf. Model. 63 (13) (2023)
Lulu Zheng, Bin Zhu, Zengrui Wu, Mei Guo, Jinyao Chen, Minghuang Hong, Guixia Liu, Weihua Li, Guobin Ren, Yun Tang
Pharmaceutical Cocrystal Discovery via 3D-SMINBR: A New Network Recommendation Tool Augmented by 3D Molecular Conformations. J. Chem. Inf. Model. 63 (14) (2023)
Ping Zhang, Guixia Liu, Jiazhi Song
MFSJMI: Multi-label feature selection considering join mutual information and interaction weight. Pattern Recognit. 138 (2023)
Ji Lv, Guixia Liu, Yuan Ju, Houhou Huang, Dalin Li, Ying Sun
Identification of Robust Antibiotic Subgroups by Integrating Multi-Species Drug-Drug Interactions. J. Chem. Inf. Model. 63 (15) (2023)
Moran Zhou, Jiamin Sun, Zhuohang Yu, Zengrui Wu, Weihua Li, Guixia Liu, Lei Ma, Rui Wang, Yun Tang
Investigation of Anti-Alzheimer's Mechanisms of Sarsasapogenin Derivatives by Network-Based Combining Structure-Based Methods. J. Chem. Inf. Model. 63 (9) (2023)
Haibo Zhong, Ping Zhang, Guixia Liu
Multi-label feature selection via redundancy of the selected feature set. Appl. Intell. 53 (9) (2023)
Mingrui Ma, Tao Wang, Lei Song, Weijie Wang, Guixia Liu
RFR-WWANet: Weighted Window Attention-Based Recovery Feature Resolution Network for Unsupervised Image Registration. CoRR (2023)
Mingrui Ma, Guixia Liu, Lei Song, Yuanbo Xu
SEN-FCB: an unsupervised twinning neural network for image registration. Appl. Intell. 53 (10) (2023)
Yimeng Wang, Mengting Huang, Hua Deng, Weihua Li, Zengrui Wu, Yun Tang, Guixia Liu
Identification of vital chemical information via visualization of graph neural networks. Briefings Bioinform. 24 (1) (2023)
Ji Lv, Guixia Liu, Yuan Ju, Houhou Huang, Ying Sun
AADB: A Manually Collected Database for Combinations of Antibiotics With Adjuvants. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Chaofeng Lou, Hongbin Yang, Hua Deng, Mengting Huang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
Chemical rules for optimization of chemical mutagenicity via matched molecular pairs analysis and machine learning methods. J. Cheminformatics 15 (1) (2023)
Ji Lv, Guixia Liu, Yuan Ju, Binwen Sun, Houhou Huang, Ying Sun
Integrating multi-source drug information to cluster drug-drug interaction network. Comput. Biol. Medicine 162 (2023)
Hua Deng, Meng Ding, Yimeng Wang, Weihua Li, Guixia Liu, Yun Tang
ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types. Comput. Biol. Medicine 158 (2023)
He Zhao, Guixia Liu, Xintian Cao
A seed expansion-based method to identify essential proteins by integrating protein-protein interaction sub-networks and multiple biological characteristics. BMC Bioinform. 24 (1) (2023)
Dongping Li, Kexin Jiang, Dan Teng, Zengrui Wu, Weihua Li, Yun Tang, Rui Wang, Guixia Liu
Discovery of New Estrogen-Related Receptor α Agonists via a Combination Strategy Based on Shape Screening and Ensemble Docking. J. Chem. Inf. Model. 62 (3) (2022)
Dan Teng, Yang Zhou, Yun Tang, Guixia Liu, Yaoquan Tu
Mechanistic Studies on the Stereoselectivity of FFAR1 Modulators. J. Chem. Inf. Model. 62 (15) (2022)
Zhuohang Yu, Zengrui Wu, Weihua Li, Guixia Liu, Yun Tang
ADENet: a novel network-based inference method for prediction of drug adverse events. Briefings Bioinform. 23 (2) (2022)
Yimeng Wang, Yaxin Gu, Chaofeng Lou, Yuning Gong, Zengrui Wu, Weihua Li, Yun Tang, Guixia Liu
A multitask GNN-based interpretable model for discovery of selective JAK inhibitors. J. Cheminformatics 14 (1) (2022)
Chaofeng Lou, Hongbin Yang, Jiye Wang, Mengting Huang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep Learning Method. J. Chem. Inf. Model. 62 (11) (2022)
Mengting Huang, Chaofeng Lou, Zengrui Wu, Weihua Li, Philip W. Lee, Yun Tang, Guixia Liu
In silico prediction of UGT-mediated metabolism in drug-like molecules via graph neural network. J. Cheminformatics 14 (1) (2022)
Jiye Wang, Chaofeng Lou, Guixia Liu, Weihua Li, Zengrui Wu, Yun Tang
Profiling prediction of nuclear receptor modulators with multi-task deep learning methods: toward the virtual screening. Briefings Bioinform. 23 (5) (2022)
Mingrui Ma, Yuanbo Xu, Lei Song, Guixia Liu
Symmetric transformer-based network for unsupervised image registration. Knowl. Based Syst. 257 (2022)
Lei Song, Guixia Liu, Mingrui Ma
TD-Net: unsupervised medical image registration network based on Transformer and CNN. Appl. Intell. 52 (15) (2022)
Mingrui Ma, Lei Song, Yuanbo Xu, Guixia Liu
Symmetric Transformer-based Network for Unsupervised Image Registration. CoRR (2022)
Ji Lv, Guixia Liu, Junli Hao, Yuan Ju, Binwen Sun, Ying Sun
Computational models, databases and tools for antibiotic combinations. Briefings Bioinform. 23 (5) (2022)
Lulu Zheng, Bin Zhu, Zengrui Wu, Fang Liang, Minghuang Hong, Guixia Liu, Weihua Li, Guobin Ren, Yun Tang
SMINBR: An Integrated Network and Chemoinformatics Tool Specialized for Prediction of Two-Component Crystal Formation. J. Chem. Inf. Model. 61 (9) (2021)
Zengrui Wu, Qiaohui Wang, Hongbin Yang, Jiye Wang, Weihua Li, Guixia Liu, Yi Yang, Yuzheng Zhao, Yun Tang
Discovery of Natural Products Targeting NQO1 via an Approach Combining Network-Based Inference and Identification of Privileged Substructures. J. Chem. Inf. Model. 61 (5) (2021)
Ping Zhang, Guixia Liu, Wanfu Gao, Jiazhi Song
Multi-label feature selection considering label supplementation. Pattern Recognit. 120 (2021)
Jiye Wang, Zengrui Wu, Yayuan Peng, Weihua Li, Guixia Liu, Yun Tang
Pathway-Based Drug Repurposing with DPNetinfer: A Method to Predict Drug-Pathway Associations via Network-Based Approaches. J. Chem. Inf. Model. 61 (5) (2021)
Yayuan Peng, Manjiong Wang, Yixiang Xu, Zengrui Wu, Jiye Wang, Chao Zhang, Guixia Liu, Weihua Li, Jian Li, Yun Tang
Drug repositioning by prediction of drug's anatomical therapeutic chemical code via network-based inference approaches. Briefings Bioinform. 22 (2) (2021)
Zhuohang Yu, Zengrui Wu, Weihua Li, Guixia Liu, Yun Tang
MetaADEDB 2.0: a comprehensive database on adverse drug events. Bioinform. 37 (15) (2021)
Jiazhi Song, Yanchun Liang, Guixia Liu, Rongquan Wang, Liyan Sun, Ping Zhang
A Novel Prediction Method for ATP-Binding Sites From Protein Primary Sequences Based on Fusion of Deep Convolutional Neural Network and Ensemble Learning. IEEE Access 8 (2020)
Rongquan Wang, Caixia Wang, Guixia Liu
A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks. Inf. Sci. 522 (2020)
Zengrui Wu, Yayuan Peng, Zhuohang Yu, Weihua Li, Guixia Liu, Yun Tang
NetInfer: A Web Server for Prediction of Targets and Therapeutic and Adverse Effects via Network-Based Inference Methods. J. Chem. Inf. Model. 60 (8) (2020)
Dan Teng, Jianhui Chen, Dongping Li, Zengrui Wu, Weihua Li, Yun Tang, Guixia Liu
Computational Insights into Molecular Activation and Positive Cooperative Mechanisms of FFAR1 Modulators. J. Chem. Inf. Model. 60 (6) (2020)
Yue Chen, Junhao Li, Zengrui Wu, Guixia Liu, Honglin Li, Yun Tang, Weihua Li
Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor. J. Chem. Inf. Model. 60 (3) (2020)
Liyan Sun, Guixia Liu, Rongquan Wang
SHEIB-AGM: A Novel Stochastic Approach for Detecting High-Order Epistatic Interactions Using Bioinformation With Automatic Gene Matrix in Genome-Wide Association Studies. IEEE Access 8 (2020)
Lixia Sun, Hongbin Yang, Yingchun Cai, Weihua Li, Guixia Liu, Yun Tang
In Silico Prediction of Endocrine Disrupting Chemicals Using Single-Label and Multilabel Models. J. Chem. Inf. Model. 59 (3) (2019)
Feixiong Cheng, Weihua Li, Yadi Zhou, Jie Shen, Zengrui Wu, Guixia Liu, Philip W. Lee, Yun Tang
Correction to "admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties". J. Chem. Inf. Model. 59 (11) (2019)
Yingchun Cai, Hongbin Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
Computational Prediction of Site of Metabolism for UGT-Catalyzed Reactions. J. Chem. Inf. Model. 59 (3) (2019)
Xinzhe Xiao, Zehui Chen, Zengrui Wu, Tianduanyi Wang, Weihua Li, Guixia Liu, Bo Zhang, Yun Tang
Insights into the antineoplastic mechanism of Chelidonium majus via systems pharmacology approach. Quant. Biol. 7 (1) (2019)
Chuyi Song, Guixia Liu, Jiazhi Song, Jingqing Jiang
A Novel Prediction Method of ATP Binding Residues from Protein Primary Sequence. ISNN (2) (2019)
Hongbin Yang, Chaofeng Lou, Lixia Sun, Jie Li, Yingchun Cai, Zhuang Wang, Weihua Li, Guixia Liu, Yun Tang
admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties. Bioinform. 35 (6) (2019)
Rongquan Wang, Guixia Liu, Caixia Wang
Identifying protein complexes based on an edge weight algorithm and core-attachment structure. BMC Bioinform. 20 (1) (2019)
Ping Zhang, Guixia Liu, Wanfu Gao
Distinguishing two types of labels for multi-label feature selection. Pattern Recognit. 95 (2019)
Ping Zhang, Wanfu Gao, Guixia Liu
Feature selection considering weighted relevancy. Appl. Intell. 48 (12) (2018)
Yingchun Cai, Hongbin Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
Multiclassification Prediction of Enzymatic Reactions for Oxidoreductases and Hydrolases Using Reaction Fingerprints and Machine Learning Methods. J. Chem. Inf. Model. 58 (6) (2018)
Hongbin Yang, Lixia Sun, Zhuang Wang, Weihua Li, Guixia Liu, Yun Tang
ADMETopt: A Web Server for ADMET Optimization in Drug Design via Scaffold Hopping. J. Chem. Inf. Model. 58 (10) (2018)
Rongquan Wang, Guixia Liu, Caixia Wang, Lingtao Su, Liyan Sun
Predicting overlapping protein complexes based on core-attachment and a local modularity structure. BMC Bioinform. 19 (1) (2018)
Lingtao Su, Guixia Liu, Tian Bai, Xiangyu Meng, Qingshan Ma
MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization. BMC Bioinform. 19 (1) (2018)
Lingtao Su, Dong Xu, Guixia Liu
A new method for disease-related gene prioritization. BIBM (2017)
Zengrui Wu, Feixiong Cheng, Jie Li, Weihua Li, Guixia Liu, Yun Tang
SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning. Briefings Bioinform. 18 (2) (2017)
Hanwen Du, Junhao Li, Yingchun Cai, Hongxiao Zhang, Guixia Liu, Yun Tang, Weihua Li
Computational Investigation of Ligand Binding to the Peripheral Site in CYP3A4: Conformational Dynamics and Inhibitor Discovery. J. Chem. Inf. Model. 57 (3) (2017)
Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45 (Database-Issue) (2017)
Zhihui Zhou, Guixia Liu, Lingtao Su
A new approach to detect epistasis utilizing parallel implementation of ant colony optimization by MapReduce framework. Int. J. Comput. Math. 93 (3) (2016)
Xiao Li, Lei Chen, Feixiong Cheng, Zengrui Wu, Hanping Bian, Congying Xu, Weihua Li, Guixia Liu, Xu Shen, Yun Tang
Prediction of Chemical Acute Oral Toxicity Using Multi-Classification Methods. J. Chem. Inf. Model. 54 (4) (2014)
Zhihui Zhou, Guixia Liu, Lingtao Su, Liang Han, Lun Yan
A New Epistasis Detecting Algorithm Based on Ant Colony Optimization. ICIMCS (2014)
Zhihui Zhou, Guixia Liu, Lingtao Su, Lun Yan, Liang Han
CChi: An efficient cloud epistasis test model in human genome wide association studies. BMEI (2013)
Feixiong Cheng, Weihua Li, Zengrui Wu, Xichuan Wang, Chen Zhang, Jie Li, Guixia Liu, Yun Tang
Prediction of Polypharmacological Profiles of Drugs by the Integration of Chemical, Side Effect, and Therapeutic Space. J. Chem. Inf. Model. 53 (4) (2013)
Feixiong Cheng, Weihua Li, Yadi Zhou, Jie Shen, Zengrui Wu, Guixia Liu, Philip W. Lee, Yun Tang
admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties. J. Chem. Inf. Model. 52 (11) (2012)
Feixiong Cheng, Chuang Liu, Jing Jiang, Weiqiang Lu, Weihua Li, Guixia Liu, Wei-Xing Zhou, Jin Huang, Yun Tang
Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference. PLoS Comput. Biol. 8 (5) (2012)
Guoping Hu, Guanglin Kuang, Wen Xiao, Weihua Li, Guixia Liu, Yun Tang
Performance Evaluation of 2D Fingerprint and 3D Shape Similarity Methods in Virtual Screening. J. Chem. Inf. Model. 52 (5) (2012)
Feixiong Cheng, Yutaka Ikenaga, Yadi Zhou, Yue Yu, Weihua Li, Jie Shen, Zheng Du, Lei Chen, Congying Xu, Guixia Liu, Philip W. Lee, Yun Tang
In Silico Assessment of Chemical Biodegradability. J. Chem. Inf. Model. 52 (3) (2012)
Weihua Li, Jing Fu, Feixiong Cheng, Mingyue Zheng, Jian Zhang, Guixia Liu, Yun Tang
Unbinding Pathways of GW4064 from Human Farnesoid X Receptor As Revealed by Molecular Dynamics Simulations. J. Chem. Inf. Model. 52 (11) (2012)
Congying Xu, Feixiong Cheng, Lei Chen, Zheng Du, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
In silico Prediction of Chemical Ames Mutagenicity. J. Chem. Inf. Model. 52 (11) (2012)
Feixiong Cheng, Yue Yu, Yadi Zhou, Zhonghua Shen, Wen Xiao, Guixia Liu, Weihua Li, Philip W. Lee, Yun Tang
Insights into Molecular Basis of Cytochrome P450 Inhibitory Promiscuity of Compounds. J. Chem. Inf. Model. 51 (10) (2011)
Feixiong Cheng, Yue Yu, Jie Shen, Lei Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang
Classification of Cytochrome P450 Inhibitors and Noninhibitors Using Combined Classifiers. J. Chem. Inf. Model. 51 (5) (2011)
Yaozong Li, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu, Yun Tang
Accuracy Assessment of Protein-Based Docking Programs against RNA Targets. J. Chem. Inf. Model. 50 (6) (2010)
Ming Zheng, Guixia Liu, Deping Wang, Yan Wang, Chunguang Zhou, Yuan Tian
Gene Regulatory Network Reconstruction with Multiple Dataset Fusion and Differential Equation. FCST (2010)
Ming Zheng, Guixia Liu, Chunguang Zhou, Yanchun Liang, Yan Wang
Gravitation field algorithm and its application in gene cluster. Algorithms Mol. Biol. 5 (2010)
Shanhong Zheng, Chunguang Zhou, Guixia Liu
Signaling Pathway Reconstruction by Fusing Priori Knowledge. ICIC (1) (2009)
Lan Huang, Guixia Liu, Rongxing Wang, Bin Yang, Chunguang Zhou
Improved Clonal Selection Algorithm for Protein Contact Map Prediction. NCM (2009)
Shanhong Zheng, Chunguang Zhou, Yanwen Li, Guixia Liu
Research on Signaling Pathway Reconstruction Based on HMM. ICYCS (2008)
Wengang Zhou, Chunguang Zhou, Guixia Liu, Hong Zhu
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory. AIAI (2006)
Wengang Zhou, Chunguang Zhou, Hong Zhu, Guixia Liu, Xiaoyu Chang
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory. ICIC (3) (2006)
Guixia Liu, Yuanxian Zhu, Wengang Zhou, Chunguang Zhou, Rongxing Wang
Prediction of Contact Maps Using Modified Transiently Chaotic Neural Network. ISNN (2) (2006)
Wengang Zhou, Chunguang Zhou, Guixia Liu, Yanxin Huang
Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization. RSFDGrC (2) (2005)
Guixia Liu, Chunguang Zhou, Yuanxian Zhu, Wengang Zhou
Prediction of Contact Maps in Proteins Based on Recurrent Neural Network with Bias Units. ISNN (3) (2005)