Oladimeji Farri

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 40

Top Topics

Convolutional Neural Network

Question Answering

Top Venues

CLEF (Working Notes)

Publications

Cuong Nhat Ha, Shima Asaadi, Sanjeev Kumar Karn, Oladimeji Farri, Tobias Heimann, Thomas A. Runkler
Fusion of Domain-Adapted Vision and Language Models for Medical Visual Question Answering. CoRR (2024)
Rikhiya Ghosh, Oladimeji Farri, Hans-Martin von Stockhausen, Martin Schmitt, George Marica
CVE-LLM : Automatic vulnerability evaluation in medical device industry using large language models. CoRR (2024)
Manuela Daniela Danu, George Marica, Constantin Suciu, Lucian Mihai Itu, Oladimeji Farri
Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT Embeddings. CLEF (Working Notes) (2024)
Manuela Daniela Danu, Vasile George Marica, Sanjeev Kumar Karn, Bogdan Georgescu, Awais Mansoor, Florin C. Ghesu, Lucian Mihai Itu, Constantin Suciu, Sasa Grbic, Oladimeji Farri, Dorin Comaniciu
Generation of Radiology Findings in Chest X-Ray by Leveraging Collaborative Knowledge. CoRR (2023)
Ali H. Dhanaliwala, Rikhiya Ghosh, Sanjeev Kumar Karn, Poikavila Ullaskrishnan, Oladimeji Farri, Dorin Comaniciu, Charles E. Kahn
General-Purpose vs. Domain-Adapted Large Language Models for Extraction of Data from Thoracic Radiology Reports. CoRR (2023)
Rikhiya Ghosh, Oladimeji Farri, Sanjeev Kumar Karn, Manuela Daniela Danu, Ramya Vunikili, Larisa Micu
RadLing: Towards Efficient Radiology Report Understanding. ACL (industry) (2023)
Sanjeev Kumar Karn, Rikhiya Ghosh, Kusuma P, Oladimeji Farri
shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation. CoRR (2023)
Rikhiya Ghosh, Sanjeev Kumar Karn, Manuela Daniela Danu, Larisa Micu, Ramya Vunikili, Oladimeji Farri
RadLing: Towards Efficient Radiology Report Understanding. CoRR (2023)
Sanjeev Kumar Karn, Rikhiya Ghosh, Kusuma P, Oladimeji Farri
shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned LLMs for Radiology Report Impression Generation. BioNLP@ACL (2023)
Sanjeev Kumar Karn, Ning Liu, Hinrich Schütze, Oladimeji Farri
Differentiable Multi-Agent Actor-Critic for Multi-Step Radiology Report Summarization. ACL (1) (2022)
Sanjeev Kumar Karn, Ning Liu, Hinrich Schütze, Oladimeji Farri
Differentiable Multi-Agent Actor-Critic for Multi-Step Radiology Report Summarization. CoRR (2022)
Ramya Vunikili, Supriya H. N, Vasile George Marica, Oladimeji Farri
Clinical NER using Spanish BERT Embeddings. IberLEF@SEPLN (2020)
Rajeev Bhatt Ambati, Ahmed Ada Hanifi, Ramya Vunikili, Puneet Sharma, Oladimeji Farri
Assertion Detection in Multi-Label Clinical Text using Scope Localization. CoRR (2020)
Imon Banerjee, Yuan Ling, Matthew C. Chen, Sadid A. Hasan, Curtis P. Langlotz, Nathaniel Moradzadeh, Brian E. Chapman, Timothy Amrhein, David A. Mong, Daniel L. Rubin, Oladimeji Farri, Matthew P. Lungren
Comparative effectiveness of convolutional neural network (CNN) and recurrent neural network (RNN) architectures for radiology text report classification. Artif. Intell. Medicine 97 (2019)
Reza Ghaeini, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Xiaoli Z. Fern, Oladimeji Farri
DR-BiLSTM: Dependent Reading Bidirectional LSTM for Natural Language Inference. NAACL-HLT (2018)
Sadid A. Hasan, Yuan Ling, Oladimeji Farri, Joey Liu, Henning Müller, Matthew P. Lungren
Overview of ImageCLEF 2018 Medical Domain Visual Question Answering Task. CLEF (Working Notes) (2018)
Reza Ghaeini, Sadid A. Hasan, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Xiaoli Z. Fern, Oladimeji Farri
DR-BiLSTM: Dependent Reading Bidirectional LSTM for Natural Language Inference. CoRR (2018)
Bogdan Ionescu, Henning Müller, Mauricio Villegas, Alba Garcia Seco de Herrera, Carsten Eickhoff, Vincent Andrearczyk, Yashin Dicente Cid, Vitali Liauchuk, Vassili Kovalev, Sadid A. Hasan, Yuan Ling, Oladimeji Farri, Joey Liu, Matthew P. Lungren, Duc-Tien Dang-Nguyen, Luca Piras, Michael Riegler, Liting Zhou, Mathias Lux, Cathal Gurrin
Overview of ImageCLEF 2018: Challenges, Datasets and Evaluation. CLEF (2018)
Viraj Adduru, Sadid A. Hasan, Joey Liu, Yuan Ling, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
Towards Dataset Creation And Establishing Baselines for Sentence-level Neural Clinical Paraphrase Generation and Simplification. KHD@IJCAI (2018)
Kathy Lee, Ashequl Qadir, Sadid A. Hasan, Vivek V. Datla, Aaditya Prakash, Joey Liu, Oladimeji Farri
Adverse Drug Event Detection in Tweets with Semi-Supervised Convolutional Neural Networks. WWW (2017)
Aaditya Prakash, Siyuan Zhao, Sadid A. Hasan, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Joey Liu, Oladimeji Farri
Condensed Memory Networks for Clinical Diagnostic Inferencing. AAAI (2017)
Kathy Lee, Ashequl Qadir, Yuan Ling, Joey Liu, Sadid A. Hasan, Vivek V. Datla, Aaditya Prakash, Oladimeji Farri
Recognizing Tweet Relevance with Profile-specific and Profile-independent Supervised Models. TREC (2017)
Yuan Ling, Sadid A. Hasan, Vivek Varma Datla, Ashequl Qadir, Kathy Lee, Joey Liu, Oladimeji Farri
Learning to Diagnose: Assimilating Clinical Narratives using Deep Reinforcement Learning. IJCNLP(1) (2017)
Vivek V. Datla, Tilak Raj Arora, Joey Liu, Viraj Adduru, Sadid A. Hasan, Kathy Lee, Ashequl Qadir, Yuan Ling, Aaditya Prakash, Oladimeji Farri
Open domain real-time question answering based on asynchronous multiperspective context-driven retrieval and neural paraphrasing. TREC (2017)
Vivek V. Datla, Sadid A. Hasan, Ashequl Qadir, Kathy Lee, Yuan Ling, Joey Liu, Oladimeji Farri
Automated clinical diagnosis: The role of content in various sections of a clinical document. BIBM (2017)
Kathy Lee, Sadid A. Hasan, Oladimeji Farri, Alok N. Choudhary, Ankit Agrawal
Medical Concept Normalization for Online User-Generated Texts. ICHI (2017)
Lucas E. S. Oliveira, Caroline P. Gebeluca, Adalniza M. P. Silva, Claudia M. C. Moro, Sadid A. Hasan, Oladimeji Farri
A statistics and UMLS-based tool for assisted semantic annotation of Brazilian clinical documents. BIBM (2017)
Yuan Ling, Sadid A. Hasan, Michele Filannino, Kevin P. Buchan, Kahyun Lee, Joey Liu, William Boag, Di Jin, Özlem Uzuner, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
A Hybrid Approach to Precision Medicine-related Biomedical Article Retrieval and Clinical Trial Matching. TREC (2017)
Sadid A. Hasan, Yuan Ling, Joey Liu, Rithesh Sreenivasan, Shreya Anand, Tilak Raj Arora, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Christine Leon Swisher, Oladimeji Farri
PRNA at ImageCLEF 2017 Caption Prediction and Concept Detection Tasks. CLEF (Working Notes) (2017)
Carson Tao, Kahyun Lee, Michele Filannino, Kevin Buchan, Kathy Lee, Tilak Raj Arora, Joey Liu, Oladimeji Farri, Özlem Uzuner
Extracting and Normalizing Adverse Drug Reactions from Drug Labels. TAC (2017)
Sadid A. Hasan, Yuan Ling, Joey Liu, Rithesh Sreenivasan, Shreya Anand, Tilak Raj Arora, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Christine Leon Swisher, Oladimeji Farri
Attention-Based Medical Caption Generation with Image Modality Classification and Clinical Concept Mapping. CLEF (2017)
Yuan Ling, Sadid A. Hasan, Vivek V. Datla, Ashequl Qadir, Kathy Lee, Joey Liu, Oladimeji Farri
Diagnostic Inferencing via Improving Clinical Concept Extraction with Deep Reinforcement Learning: A Preliminary Study. MLHC (2017)
Aaditya Prakash, Sadid A. Hasan, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Joey Liu, Oladimeji Farri
Neural Paraphrase Generation with Stacked Residual LSTM Networks. COLING (2016)
Aaditya Prakash, Sadid A. Hasan, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Joey Liu, Oladimeji Farri
Neural Paraphrase Generation with Stacked Residual LSTM Networks. CoRR (2016)
Vivek V. Datla, Sadid A. Hasan, Joey Liu, Yassine Benajiba, Kathy Lee, Ashequl Qadir, Aaditya Prakash, Oladimeji Farri
Open Domain Real-Time Question Answering Based on Semantic and Syntactic Question Similarity. TREC (2016)
Sadid A. Hasan, Siyuan Zhao, Vivek V. Datla, Joey Liu, Kathy Lee, Ashequl Qadir, Aaditya Prakash, Oladimeji Farri
Clinical Question Answering using Key-Value Memory Networks and Knowledge Graph. TREC (2016)
Aaditya Prakash, Siyuan Zhao, Sadid A. Hasan, Vivek V. Datla, Kathy Lee, Ashequl Qadir, Joey Liu, Oladimeji Farri
Condensed Memory Networks for Clinical Diagnostic Inferencing. CoRR (2016)
Kathy Lee, Ashequl Qadir, Vivek V. Datla, Sadid A. Hasan, Joey Liu, Aaditya Prakash, Oladimeji Farri
Assorted Textual Features and Dynamic Push Strategies for Real-time Tweet Notification. TREC (2016)
Gretchen M. Hultman, Jenna L. Marquard, Osadebamwen Ighile, Oladimeji Farri, Elizabeth Lindemann, Elliot G. Arsoniadis, Serguei V. S. Pakhomov, Genevieve B. Melton
Does Section Order Affect Physicians' Experiences Reviewing Ambulatory Progress Notes? AMIA (2016)
Sadid A. Hasan, Bo Liu, Joey Liu, Ashequl Qadir, Kathy Lee, Vivek V. Datla, Aaditya Prakash, Oladimeji Farri
Neural Clinical Paraphrase Generation with Attention. ClinicalNLP@COLING 2016 (2016)
Sadid A. Hasan, Yuan Ling, Joey Liu, Oladimeji Farri
Exploiting Neural Embeddings for Social Media Data Analysis. TREC (2015)
Sadid A. Hasan, Yuan Ling, Joey Liu, Oladimeji Farri
Using Neural Embeddings for Diagnostic Inferencing in Clinical Question Answering. TREC (2015)
Sadid A. Hasan, Xianshu Zhu, Joey Liu, Claudia Maria Cabral Moro Barra, Lucas E. S. Oliveira, Oladimeji Farri
Ontology-Driven Semantic Search for Brazilian Portuguese Clinical Notes. MedInfo (2015)
Reza Sharifi Sedeh, Xianshu Zhu, Yugang Jia, Joey Liu, Oladimeji Farri, Daniel Elgort
Drug Database Refinement Using Machine Learning and Text Analysis. AMIA (2015)
Sadid A. Hasan, Xianshu Zhu, Yao Dong, Joey Liu, Oladimeji Farri
A Hybrid Approach to Clinical Question Answering. TREC (2014)
Oladimeji Farri, Karen A. Monsen, Serguei V. S. Pakhomov, David S. Pieczkiewicz, Stuart M. Speedie, Genevieve B. Melton
Effects of time constraints on clinician-computer interaction: A study on information synthesis from EHR clinical notes. J. Biomed. Informatics 46 (6) (2013)
Karen A. Monsen, Eunice M. Areba, David M. Radosevich, Joan K. Brandt, Amy B. Lytton, Madeleine J. Kerr, Karen E. Johnson, Oladimeji Farri, Karen S. Martin
Evaluating Effects of Public Health Nurse Home Visitng on Health Literacy for Immigrants and Refugees Using Standardized Nursing Terminology Data. Nursing Informatics (2012)
Karen A. Monsen, Claire Neely, Gary Oftedahl, Madeleine J. Kerr, Pam Pietruszewski, Oladimeji Farri
Feasibility of encoding the Institute for Clinical Systems Improvement Depression Guideline using the Omaha System. J. Biomed. Informatics 45 (4) (2012)
Oladimeji Farri, David S. Pieczkiewicz, Ahmed Rahman, Serguei V. S. Pakhomov, Terrence Adam, Genevieve B. Melton
A Qualitative Analysis of EHR Clinical Document Synthesis by Clinicians. AMIA (2012)