Pujan Joshi

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 9

Top Topics

Gene Expression

Outcome Prediction

Regulatory Networks

Top Venues

Publications

Honglin Wang, Pujan Joshi, Chenyu Zhang, Peter F. Maye, David W. Rowe, Dong-Guk Shin
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. BCB (2022)
Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. BIBM (2022)
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Dong-Ju Shin, Dong-Guk Shin
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. BIBM (2021)
Pujan Joshi, Honglin Wang, Salvatore Jaramillo, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts. BIBM (2021)
Pujan Joshi, Brent Basso, Honglin Wang, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
Identification of Key Biological Pathway Routes in Cancer Cohorts. BIBM (2020)
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Peter F. Maye, David W. Rowe, Dong-Guk Shin
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. BIBM (2020)
Pujan Joshi, Honglin Wang, Brent Basso, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
A Framework for Route Based Pathway Analysis of Gene Expression Data. ICCBB (2020)
Yue Zhao, Pujan Joshi, Dong-Guk Shin
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data. BIBM (2019)
Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin
Deep pathway analysis incorporating mutation information and gene expression data. BIBM (2016)
Pujan Joshi, Baikang Pei, Seung-Hyun Hong, Ivo Kalajzic, Dong-Ju Shin, David W. Rowe, Dong-Guk Shin
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. BIBM (2013)
Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. IJCBS (2009)