Robert A. McDougal

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 18

Top Topics

Computational Neuroscience

Metadata Elements

Diffusion Models

Knowledge Resources

Top Venues

Frontiers Neuroinformatics

Neuroinformatics

Publications

Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. J. Biomed. Semant. 15 (1) (2024)
Ziqing Ji, Siyan Guo, Yujie Qiao, Robert A. McDougal
Automating literature screening and curation with applications to computational neuroscience. J. Am. Medical Informatics Assoc. 31 (7) (2024)
Adam J. H. Newton, David Chartash, Steven H. Kleinstein, Robert A. McDougal
A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures. BMC Bioinform. 24 (1) (2023)
Chris Fietkiewicz, Robert A. McDougal, David Corrales Marco, Hillel J. Chiel, Peter J. Thomas
Tutorial: using NEURON for neuromechanical simulations. Frontiers Comput. Neurosci. 17 (2023)
Evan Cudone, Amelia M. Lower, Robert A. McDougal
Reproducibility of biophysical in silico neuron states and spikes from event-based partial histories. PLoS Comput. Biol. 19 (10) (2023)
Omar Awile, Pramod S. Kumbhar, Nicolas Cornu, Salvador Dura-Bernal, James Gonzalo King, Olli Lupton, Ioannis Magkanaris, Robert A. McDougal, Adam J. H. Newton, Fernando Pereira, Alexandru Savulescu, Nicholas T. Carnevale, William W. Lytton, Michael L. Hines, Felix Schürmann
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. Frontiers Neuroinformatics 16 (2022)
Robert A. McDougal, Cameron Conte, Lia Eggleston, Adam J. H. Newton, Hana Galijasevic
Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks. Frontiers Neuroinformatics 16 (2022)
Sharon M. Crook, Andrew P. Davison, Robert A. McDougal, Hans Ekkehard Plesser
Editorial: Reproducibility and Rigour in Computational Neuroscience. Frontiers Neuroinformatics 14 (2020)
Mohammad Nazrul Ishlam Patoary, Carl Tropper, Robert A. McDougal, Zhongwei Lin, William W. Lytton
Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Robert A. McDougal, Isha Dalal, Thomas M. Morse, Gordon M. Shepherd
Automated Metadata Suggestion During Repository Submission. Neuroinformatics 17 (3) (2019)
Adam J. H. Newton, Robert A. McDougal, Michael L. Hines, William W. Lytton
Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. Frontiers Neuroinformatics 12 (2018)
Zhongwei Lin, Carl Tropper, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Yiping Yao, Michael L. Hines
Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. ACM Trans. Model. Comput. Simul. 27 (2) (2017)
Zhongwei Lin, Carl Tropper, Yiping Yao, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Michael L. Hines
Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. J. Simulation 11 (3) (2017)
Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis N. Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines
Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. J. Comput. Neurosci. 42 (1) (2017)
Mohammad Nazrul Ishlam Patoary, Carl Tropper, Robert A. McDougal, William W. Lytton
Optimizations for Neuron Time Warp(NTW) for stochastic reaction-diffusion models of neurons. WSC (2017)
Luis N. Marenco, Rixin Wang, Robert A. McDougal, Tsviya Olender, Michal Twik, Elspeth A. Bruford, Xinyi Liu, Jian Zhang, Doron Lancet, Gordon M. Shepherd, Chiquito J. Crasto
ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions. Database J. Biol. Databases Curation 2016 (2016)
Robert A. McDougal, Anna S. Bulanova, William W. Lytton
Reproducibility in Computational Neuroscience Models and Simulations. IEEE Trans. Biomed. Eng. 63 (10) (2016)
William W. Lytton, Alexandra Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines
Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput. 28 (10) (2016)
Zhongwei Lin, Carl Tropper, Mohammand Nazrul Ishlam Patoary, Robert A. McDougal, William W. Lytton, Michael L. Hines
NTW-MT: a Multi-threaded Simulator for Reaction Diffusion Simulations in NEURON. SIGSIM-PADS (2015)
Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd
ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics 13 (4) (2015)
Samuel A. Neymotin, Robert A. McDougal, Mohamed A. Sherif, Christopher P. Fall, Michael L. Hines, William W. Lytton
Neuronal Calcium Wave Propagation Varies with Changes in Endoplasmic Reticulum Parameters: A Computer Model. Neural Comput. 27 (4) (2015)
Robert A. McDougal, Gordon M. Shepherd
3D-printer visualization of neuron models. Frontiers Neuroinformatics 9 (2014)
Mohammand Nazrul Ishlam Patoary, Carl Tropper, Zhongwei Lin, Robert A. McDougal, William W. Lytton
Neuron time warp. WSC (2014)
Robert A. McDougal, Michael L. Hines, William W. Lytton
Reaction-diffusion in the NEURON simulator. Frontiers Neuroinformatics 7 (2013)