Jennifer Hallinan

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 12

Top Topics

Escherichia Coli

Genetic Networks

Computational Intelligence

Top Venues

J. Integr. Bioinform.

Publications

Jaskaran Gill, Madhu Chetty, Suryani Lim, Jennifer Hallinan
Knowledge-Based Intelligent Text Simplification for Biological Relation Extraction. Informatics 10 (4) (2023)
Hasini Nakulugamuwa Gamage, Madhu Chetty, Suryani Lim, Jennifer Hallinan, Huy Nguyen
A Robust Ensemble Regression Model for Reconstructing Genetic Networks. IJCNN (2023)
Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
Filter feature selection based Boolean Modelling for Genetic Network Inference. Biosyst. 221 (2022)
Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan
Modelling the fitness landscapes of a SCRaMbLEd yeast genome. Biosyst. 219 (2022)
Madhu Chetty, Jennifer Hallinan, Gonzalo A. Ruz, Anil Wipat
Computational intelligence and machine learning in bioinformatics and computational biology. Biosyst. 222 (2022)
Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
Ensemble Regression Modelling for Genetic Network Inference. CIBCB (2022)
Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
Integrating steady-state and dynamic gene expression data for improving genetic network modelling. CIBCB (2022)
Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
Combining kinetic orders for efficient S-System modelling of gene regulatory network. Biosyst. 220 (2022)
Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
An Efficient Boolean Modelling Approach for Genetic Network Inference. CIBCB (2021)
Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
Dynamically Regulated Initialization for S-system Modelling of Genetic Networks. CIBCB (2021)
Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan
Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome. CIBCB (2021)
D. J. Skelton, Jennifer Hallinan, S. Park, Anil Wipat
Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway. CIBCB (2016)
Goksel Misirli, Jennifer Hallinan, Anil Wipat
Composable Modular Models for Synthetic Biology. ACM J. Emerg. Technol. Comput. Syst. 11 (3) (2014)
Goksel Misirli, Jennifer Hallinan, Richard Röttger, Jan Baumbach, Anil Wipat
BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species. J. Integr. Bioinform. 11 (2) (2014)
Julija Rusakovica, Jennifer Hallinan, Anil Wipat, Paolo Zuliani
Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features. J. Integr. Bioinform. 11 (2) (2014)
Jennifer Hallinan, Owen Gilfellon, Goksel Misirli, Anil Wipat
Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts. CIBCB (2014)
Keith Flanagan, Simon J. Cockell, Colin Harwood, Jennifer Hallinan, Sirintra Nakjang, Beth Lawry, Anil Wipat
A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci. J. Integr. Bioinform. 11 (2) (2014)
Goksel Misirli, Anil Wipat, Joseph Mullen, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integr. Bioinform. 10 (2) (2013)
Jochen Weile, Katherine James, Jennifer Hallinan, Simon J. Cockell, Phillip W. Lord, Anil Wipat, Darren J. Wilkinson
Bayesian integration of networks without gold standards. Bioinform. 28 (11) (2012)
Jennifer Hallinan, S. Park, Anil Wipat
Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits. BIOINFORMATICS (2012)
Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt, Matthew R. Pocock, Anil Wipat
Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integr. Bioinform. 9 (2) (2012)
Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat
Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinform. 27 (7) (2011)
Jochen Weile, Matthew R. Pocock, Simon J. Cockell, Phillip W. Lord, James M. Dewar, Eva-Maria Holstein, Darren J. Wilkinson, David A. Lydall, Jennifer Hallinan, Anil Wipat
Customizable views on semantically integrated networks for systems biology. Bioinform. 27 (9) (2011)
Mike T. Cooling, V. Rouilly, Goksel Misirli, James R. Lawson, Tommy Yu, Jennifer Hallinan, Anil Wipat
Standard virtual biological parts: a repository of modular modeling components for synthetic biology. Bioinform. 26 (7) (2010)
Katherine James, Anil Wipat, Jennifer Hallinan
Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes. DILS (2009)
Yaochu Jin, Jennifer Hallinan
Evolving gene regulatory networks. Biosyst. 98 (3) (2009)
Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat
Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB (2009)
Jennifer Hallinan, Anil Wipat
Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. CIBCB (2008)
Jennifer Hallinan, Anil Wipat
Motifs and Modules in Fractured Functional Yeast Networks. CIBCB (2007)
Jennifer Hallinan, Anil Wipat
Clustering and Cross-talk in a Yeast Functional Interaction Network. CIBCB (2006)
Jennifer Hallinan, Daniel R. Bradley, John S. Mattick, Janet Wiles
Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks. IEEE Congress on Evolutionary Computation (2006)
Jennifer Hallinan, Daniel R. Bradley, Janet Wiles
Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks. IEEE Congress on Evolutionary Computation (2006)
Janet Wiles, Nicholas Geard, James E. M. Watson, Kai Willadsen, John S. Mattick, Daniel R. Bradley, Jennifer Hallinan
modeling experience. GECCO Workshops (2005)
Jennifer Hallinan
Evolving Neural Networks for the Classification of Malignancy Associated Changes. IDEAL (2005)
Jennifer Hallinan, Paul T. Jackway
Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks. CIBCB (2005)
Jennifer Hallinan
Cluster analysis of the p53 genetic regulatory network: topology and biology. CIBCB (2004)
Jennifer Hallinan, Janet Wiles
Evolving Genetic Regulatory Networks Using an Artificial Genome. APBC (2004)
Jennifer Hallinan
Self-Organization Leads to Hierarchical Modularity in an Internet Community. KES (2003)
Nicholas Geard, Janet Wiles, Jennifer Hallinan, Bradley Tonkes, Benjamin Skellett
A comparison of neutral landscapes - NK, NKp and NKq. IEEE Congress on Evolutionary Computation (2002)
Janet Wiles, Jennifer Hallinan
Guest editorial - evolutionary computation and cognitive science: modeling evolution and evolving models. IEEE Trans. Evol. Comput. 5 (2) (2001)
Jennifer Hallinan, Paul T. Jackway
Co-operative Evolution of a Neural Classifier and Feature Subset. SEAL (1998)