Laurence Yang

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 14

Top Topics

Biological Data

Gene Expression

Maximum Common Subgraph

Top Venues

PLoS Comput. Biol.

Pattern Recognit.

Publications

Hao Xu, Shengqi Sang, Peizhen Bai, Ruike Li, Laurence Yang, Haiping Lu
GripNet: Graph information propagation on supergraph for heterogeneous graphs. Pattern Recognit. 133 (2023)
Jonathan A. J. Smith, Hao Xu, Xinran Li, Laurence Yang, Jahir Gutierrez
Compound Screening with Deep Learning for Neglected Diseases: Leishmaniasis. MLBC (2021)
Colton J. Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O. Palsson
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. PLoS Comput. Biol. 17 (6) (2021)
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinform. 21 (1) (2020)
Nathan Mih, Jonathan M. Monk, Xin Fang, Edward Catoiu, David Heckmann, Laurence Yang, Bernhard O. Palsson
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. BMC Bioinform. 21 (1) (2020)
Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression. BMC Syst. Biol. 13 (1) (2019)
Bin Du, Laurence Yang, Colton J. Lloyd, Xin Fang, Bernhard O. Palsson
Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. PLoS Comput. Biol. 15 (12) (2019)
Laurence Yang, Michael A. Saunders, Jean-Christophe Lachance, Bernhard O. Palsson, José Bento
Estimating Cellular Goals from High-Dimensional Biological Data. KDD (2019)
Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. PLoS Comput. Biol. 15 (4) (2019)
Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson
COBRAme: A computational framework for genome-scale models of metabolism and gene expression. PLoS Comput. Biol. 14 (7) (2018)
Laurence Yang, José Bento, Jean-Christophe Lachance, Bernhard O. Palsson
Genome-scale estimation of cellular objectives. CoRR (2018)
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells. CCTA (2017)
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells. PLoS Comput. Biol. 13 (3) (2017)
Laurence Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
solveME: fast and reliable solution of nonlinear ME models. BMC Bioinform. 17 (2016)
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
Designing experiments from noisy metabolomics data to refine constraint-based models. ACC (2010)
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks. Comput. Chem. Eng. 32 (9) (2008)