Radhakrishnan Mahadevan

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 12

Top Topics

Sequence Prediction

Top Venues

PLoS Comput. Biol.

Comput. Chem. Eng.

Database J. Biol. Databases Curation

Publications

Rafael D. de Oliveira, Galo A. C. Le Roux, Radhakrishnan Mahadevan
Nonlinear programming reformulation of dynamic flux balance analysis models. Comput. Chem. Eng. 170 (2023)
Kiandokht Haddadi, Rana Ahmed Barghout, Radhakrishnan Mahadevan
KinMod database: a tool for investigating metabolic regulation. Database J. Biol. Databases Curation 2022 (2022) (2022)
Zhiqing Xu, Jinghao Wu, Yun S. Song, Radhakrishnan Mahadevan
Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling. MLBC (2021)
Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. PLoS Comput. Biol. 17 (8) (2021)
Dafni Giannari, Cleo Hanchen Ho, Radhakrishnan Mahadevan
A gap-filling algorithm for prediction of metabolic interactions in microbial communities. PLoS Comput. Biol. 17 (11) (2021)
Leo Zhu, William Pei, Patricia DiCiano, Bruna Brands, Christine M. Wickens, Bernard Le Foll, Bronsen Kwong, Megha Parashar, Atchu Sivananthan, Radhakrishnan Mahadevan
Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. Comput. Chem. Eng. 154 (2021)
Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinform. 21 (1) (2020)
Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
A scalable method for parameter identification in kinetic models of metabolism using steady-state data. Bioinform. 35 (24) (2019)
Masood Khaksar Toroghi, William R. Cluett, Radhakrishnan Mahadevan
A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. Comput. Chem. Eng. 130 (2019)
Kevin Correia, Shi M. Yu, Radhakrishnan Mahadevan
AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. Database J. Biol. Databases Curation 2019 (2019)
Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan
Model-based design of bistable cell factories for metabolic engineering. Bioinform. 34 (8) (2018)
Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 13 (4) (2017)
Radhakrishnan Mahadevan, Axel von Kamp, Steffen Klamt
Genome-scale strain designs based on regulatory minimal cut sets. Bioinform. 31 (17) (2015)
M. Ahsanul Islam, Elizabeth A. Edwards, Radhakrishnan Mahadevan
with a Constraint-Based Model. PLoS Comput. Biol. 6 (8) (2010)
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
Designing experiments from noisy metabolomics data to refine constraint-based models. ACC (2010)
Jun Sun, Bahareh Sayyar, Jessica E. Butler, Priti Pharkya, Tom Fahland, Iman Famili, Christophe H. Schilling, Derek R. Lovley, Radhakrishnan Mahadevan
Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Syst. Biol. 3 (2009)
Daniel Segura, Radhakrishnan Mahadevan, Katy Juarez, Derek R. Lovley
. PLoS Comput. Biol. 4 (2) (2008)
Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett
A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks. Comput. Chem. Eng. 32 (9) (2008)
Julia Krushkal, Marko Puljic, Bin Yan, Jose F. Barbe, Radhakrishnan Mahadevan, Bradley Postier, Regina A. O'Neil, Gemma Reguera, Ching Leang, Laurie N. DiDonato, Cinthia Núñez, Barbara A. Methé, Ronald M. Adkins, Derek R. Lovley
Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens. BMEI (1) (2008)
Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III
Optimal genetic manipulations in batch bioreactor control. Autom. 42 (10) (2006)
Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III
Batch control of genetic alterations for optimal metabolic engineering. ACC (2005)
Radhakrishnan Mahadevan, Francis J. Doyle
A partial flatness approach to nonlinear moving horizon estimation. ACC (2004)
Radhakrishnan Mahadevan, Francis J. Doyle
Nonlinear nonsquare control of a continuous bioreactor using flat outputs. ECC (1999)