Jürgen Zanghellini

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 13

Top Topics

Metabolic Networks

Data Warehouse Design

Genetic Algorithm

Systems Biology

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

Publications

Bianca A. Buchner, Tom J. Clement, Daan H. de Groot, Jürgen Zanghellini
: fast and memory-efficient enumeration of elementary conversion modes. Bioinform. 39 (3) (2023)
Stefan Müller, Diana Széliová, Jürgen Zanghellini
Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth. PLoS Comput. Biol. 18 (2) (2022)
Mathias Gotsmy, Julia Brunmair, Christoph Bueschl, Christopher Gerner, Jürgen Zanghellini
Probabilistic quotient's work and pharmacokinetics' contribution: countering size effect in metabolic time series measurements. BMC Bioinform. 23 (1) (2022)
Kevin Mildau, Justin J. J. van der Hooft, Mira Flasch, Benedikt Warth, Yasin El Abiead, Gunda Koellensperger, Jürgen Zanghellini, Christoph Bueschl
. Bioinform. 38 (22) (2022)
Christoph Bueschl, Maria Doppler, Elisabeth Varga, Bernhard Seidl, Mira Flasch, Benedikt Warth, Jürgen Zanghellini
PeakBot: machine-learning-based chromatographic peak picking. Bioinform. 38 (13) (2022)
Diana Széliová, Jerneja Stor, Isabella Thiel, Marcus Weinguny, Michael Hanscho, Gabriele Lhota, Nicole Borth, Jürgen Zanghellini, David E. Ruckerbauer, Isabel Rocha
Inclusion of maintenance energy improves the intracellular flux predictions of CHO. PLoS Comput. Biol. 17 (6) (2021)
Bianca A. Buchner, Jürgen Zanghellini
EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search. BMC Bioinform. 22 (1) (2021)
Matthias P. Gerstl, Stefan Müller, Georg Regensburger, Jürgen Zanghellini
Flux tope analysis: studying the coordination of reaction directions in metabolic networks. Bioinform. 35 (2) (2019)
Govind Nair, Christian Jungreuthmayer, Jürgen Zanghellini
Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization. BMC Bioinform. 18 (1) (2017)
Matthias P. Gerstl, Michael Hanscho, David E. Ruckerbauer, Jürgen Zanghellini, Nicole Borth
CHOmine: an integrated data warehouse for CHO systems biology and modeling. Database J. Biol. Databases Curation 2017 (2017)
Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. PLoS Comput. Biol. 13 (4) (2017)
Christian Jungreuthmayer, Stefan Neubauer, Teresa Mairinger, Jürgen Zanghellini, Stephan Hann
: isotope correction toolbox. Bioinform. 32 (1) (2016)
Matthias P. Gerstl, Steffen Klamt, Christian Jungreuthmayer, Jürgen Zanghellini
Exact quantification of cellular robustness in genome-scale metabolic networks. Bioinform. 32 (5) (2016)
Matthias P. Gerstl, Christian Jungreuthmayer, Jürgen Zanghellini
tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks. Bioinform. 31 (13) (2015)
Govind Nair, Christian Jungreuthmayer, Michael Hanscho, Jürgen Zanghellini
Designing minimal microbial strains of desired functionality using a genetic algorithm. Algorithms Mol. Biol. 10 (2015)
Christian Jungreuthmayer, Margot Sonnleitner, Gerald Striedner, Jürgen Mairhofer, Jürgen Zanghellini
Designing an optimally ethanol producing E. coli strain using constrained minimal cut sets. EUSIPCO (2013)
Christian Jungreuthmayer, David E. Ruckerbauer, Jürgen Zanghellini
regEfmtool: Speeding up elementary flux mode calculation using transcriptional regulatory rules in the form of three-state logic. Biosyst. 113 (1) (2013)
Christian Jungreuthmayer, Govind Nair, Steffen Klamt, Jürgen Zanghellini
Comparison and improvement of algorithms for computing minimal cut sets. BMC Bioinform. 14 (2013)
Christian Jungreuthmayer, Jürgen Zanghellini
Designing optimal cell factories: integer programming couples elementary mode analysis with regulation. BMC Syst. Biol. 6 (2012)