Axel von Kamp

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 6

Top Topics

Metabolic Networks

Biological Systems

Graphical User Interfaces

Top Venues

PLoS Comput. Biol.

Publications

Axel von Kamp, Steffen Klamt
Balancing biomass reaction stoichiometry and measured fluxes in flux balance analysis. Bioinform. 39 (10) (2023)
Sven Thiele, Axel von Kamp, Pavlos Stephanos Bekiaris, Philipp Schneider, Steffen Klamt
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks. Bioinform. 38 (5) (2022)
Philipp Schneider, Pavlos Stephanos Bekiaris, Axel von Kamp, Steffen Klamt
StrainDesign: a comprehensive Python package for computational design of metabolic networks. Bioinform. 38 (21) (2022)
Philipp Schneider, Axel von Kamp, Steffen Klamt
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. PLoS Comput. Biol. 16 (7) (2020)
Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinform. 21 (1) (2020)
Oliver Hädicke, Axel von Kamp, Timur Aydogan, Steffen Klamt
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS Comput. Biol. 14 (9) (2018)
Radhakrishnan Mahadevan, Axel von Kamp, Steffen Klamt
Genome-scale strain designs based on regulatory minimal cut sets. Bioinform. 31 (17) (2015)
Axel von Kamp, Steffen Klamt
Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks. PLoS Comput. Biol. 10 (1) (2014)
Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7 (2013)
Kathrin Ballerstein, Axel von Kamp, Steffen Klamt, Utz-Uwe Haus
Minimal cut sets in a metabolic network are elementary modes in a dual network. Bioinform. 28 (3) (2012)
Steffen Klamt, Axel von Kamp
An application programming interface for CellNetAnalyzer. Biosyst. 105 (2) (2011)
Regina Samaga, Axel von Kamp, Steffen Klamt
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks. J. Comput. Biol. 17 (1) (2010)
Steffen Klamt, Axel von Kamp
Computing paths and cycles in biological interaction graphs. BMC Bioinform. 10 (2009)
Axel von Kamp, Stefan Schuster
Metatool 5.0: fast and flexible elementary modes analysis. Bioinform. 22 (15) (2006)
Roland Schwarz, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinform. 6 (2005)