Julien Dorier

Publication Activity (10 Years)

Years Active: 2013-2019
Publications (10 Years): 4

Top Topics

Dynamical Models

Qualitative Models

Top Venues

Database J. Biol. Databases Curation

BMC Syst. Biol.

Publications

Pawel Dabrowski-Tumanski, Pawel Rubach, Dimos Goundaroulis, Julien Dorier, Piotr Sulkowski, Kenneth C. Millett, Eric J. Rawdon, Andrzej Stasiak, Joanna I. Sulkowska
KnotProt 2.0: a database of proteins with knots and other entangled structures. Nucleic Acids Res. 47 (Database-Issue) (2019)
Julien Dorier, Dimos Goundaroulis, Fabrizio Benedetti, Andrzej Stasiak
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids. Bioinform. 34 (19) (2018)
Amel Bekkar, Anne Estreicher, Anne Niknejad, Cristina Casals-Casas, Alan Bridge, Ioannis Xenarios, Julien Dorier, Isaac Crespo
Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation. Database J. Biol. Databases Curation 2018 (2018)
Julien Dorier, Isaac Crespo, Anne Niknejad, Robin Liechti, Martin Ebeling, Ioannis Xenarios
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method. BMC Bioinform. 17 (2016)
Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7 (2013)