Ali Ebrahim

ORCID

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 13

Top Venues

PLoS Comput. Biol.

ARC

AHS

ACM Trans. Reconfigurable Technol. Syst.

University of California, San Diego, USA (PHD)

Education History

University of California, San Diego, USA

PHD

Publications

Ali Ebrahim, Jalal Khalifat
Fast approximation of the top-k items in data streams using FPGAs. IET Comput. Digit. Tech. 17 (2) (2023)
Jalal Khalifat, Ali Ebrahim
Design and Implementation of a Reliable Reconfigurable Imaging System. Int. J. Embed. Real Time Commun. Syst. 13 (1) (2022)
Ali Ebrahim, Jalal Khalifat
Fast Approximation of the Top-k Items in Data Streams Using a Reconfigurable Accelerator. ARC (2021)
Colton J. Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O. Palsson
Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth. PLoS Comput. Biol. 17 (6) (2021)
Ali Ebrahim, Jalal Khlaifat
An Efficient Hardware Architecture for Finding Frequent Items in Data Streams. ICCD (2020)
Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression. BMC Syst. Biol. 13 (1) (2019)
Joanne K. Liu, Colton J. Lloyd, Mahmoud M. Al-Bassam, Ali Ebrahim, Ji-Nu Kim, Connor A. Olson, Alexander Aksenov, Pieter C. Dorrestein, Karsten Zengler
Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen. PLoS Comput. Biol. 15 (3) (2019)
Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson
COBRAme: A computational framework for genome-scale models of metabolism and gene expression. PLoS Comput. Biol. 14 (7) (2018)
Laurence Yang, Ding Ma, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson
solveME: fast and reliable solution of nonlinear ME models. BMC Bioinform. 17 (2016)
Zachary A. King, Justin Lu, Andreas Dräger, Philip Miller, Stephen Federowicz, Joshua A. Lerman, Ali Ebrahim, Bernhard O. Palsson, Nathan E. Lewis
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res. 44 (Database-Issue) (2016)
Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard O. Palsson
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. PLoS Comput. Biol. 11 (8) (2015)
Jalal Khalifat, Ali Ebrahim, Adewale Adetomi, Tughrul Arslan
A dynamic partial reconfiguration design for camera systems. AHS (2015)
Xabier Iturbe, Khaled Benkrid, Chuan Hong, Ali Ebrahim, Raul Torrego, Tughrul Arslan
Microkernel Architecture and Hardware Abstraction Layer of a Reliable Reconfigurable Real-Time Operating System (R3TOS). ACM Trans. Reconfigurable Technol. Syst. 8 (1) (2015)
Xabier Iturbe, Ali Ebrahim, Khaled Benkrid, Chuan Hong, Tughrul Arslan, Jon Pérez, Didier Keymeulen, Marco D. Santambrogio
R3TOS-Based Autonomous Fault-Tolerant Systems. IEEE Micro 34 (6) (2014)
Ali Ebrahim, Tughrul Arslan, Xabier Iturbe
A fast and scalable FPGA damage diagnostic service for R3TOS using BIST cloning technique. FPL (2014)
Ali Ebrahim, Tughrul Arslan, Xabier Iturbe
On enhancing the reliability of internal configuration controllers in FPGAs. AHS (2014)
Jalal Khalifat, Ali Ebrahim, Tughrul Arslan
An Efficient Implementation of the Adams-Hamilton's Demosaicing Algorithm in FPGAs. ARC (2014)
Ali Ebrahim, Joshua A. Lerman, Bernhard Ø. Palsson, Daniel R. Hyduke
COBRApy: COnstraints-Based Reconstruction and Analysis for Python. BMC Syst. Biol. 7 (2013)
Xabier Iturbe, Khaled Benkrid, Chuan Hong, Ali Ebrahim, Tughrul Arslan, Imanol Martinez
Runtime Scheduling, Allocation, and Execution of Real-Time Hardware Tasks onto Xilinx FPGAs Subject to Fault Occurrence. Int. J. Reconfigurable Comput. 2013 (2013)
Ali Ebrahim, Khaled Benkrid, Jalal Khalifat, Chuan Hong
A platform for secure IP integration in Xilinx Virtex FPGAs. ReConFig (2013)
Brian J. Schmidt, Ali Ebrahim, Thomas O. Metz, Joshua N. Adkins, Bernhard Ø. Palsson, Daniel R. Hyduke
E: condition-specific models of cellular metabolism developed from metabolomics and expression data. Bioinform. 29 (22) (2013)
Xabier Iturbe, Khaled Benkrid, Chuan Hong, Ali Ebrahim, Raul Torrego, Imanol Martinez, Tughrul Arslan, Jon Pérez
R3TOS: A Novel Reliable Reconfigurable Real-Time Operating System for Highly Adaptive, Efficient, and Dependable Computing on FPGAs. IEEE Trans. Computers 62 (8) (2013)
Ali Ebrahim, Khaled Benkrid, Xabier Iturbe, Chuan Hong
Multiple-clone configuration of relocatable partial bitstreams in Xilinx Virtex FPGAs. AHS (2013)
Chuan Hong, Khaled Benkrid, Xabier Iturbe, Ali Ebrahim
Design and implementation of fault-tolerant soft processors on FPGAs. FPL (2012)
Xabier Iturbe, Khaled Benkrid, Raul Torrego, Ali Ebrahim, Tughrul Arslan
Online clock routing in Xilinx FPGAs for high-performance and reliability. AHS (2012)
Ali Ebrahim, Khaled Benkrid, Xabier Iturbe, Chuan Hong
A novel high-performance fault-tolerant ICAP controller. AHS (2012)
Hanaa M. Hussain, Khaled Benkrid, Ali Ebrahim, Ahmet T. Erdogan, Huseyin Seker
Novel Dynamic Partial Reconfiguration Implementation of K-Means Clustering on FPGAs: Comparative Results with GPPs and GPUs. Int. J. Reconfigurable Comput. 2012 (2012)
Xabier Iturbe, Khaled Benkrid, Ali Ebrahim, Chuan Hong, Tughrul Arslan, Imanol Martinez
Snake: An Efficient Strategy for the Reuse of Circuitry and Partial Computation Results in High-Performance Reconfigurable Computing. ReConFig (2011)
Chuan Hong, Khaled Benkrid, Xabier Iturbe, Ali Ebrahim, Tughrul Arslan
Efficient On-Chip Task Scheduler and Allocator for Reconfigurable Operating Systems. IEEE Embed. Syst. Lett. 3 (3) (2011)

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Publication Activity (10 Years)

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Ali Ebrahim