Patrick V. Phaneuf

Publication Activity (10 Years)

Years Active: 2018-2021
Publications (10 Years): 4

Top Topics

Machine Learning

Database Management

Schema Evolution

Top Venues

Nucleic Acids Res.

BMC Syst. Biol.

PLoS Comput. Biol.

Publications

Kevin Rychel, Katherine Decker, Anand V. Sastry, Patrick V. Phaneuf, Saugat Poudel, Bernhard O. Palsson
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning. Nucleic Acids Res. 49 (Database-Issue) (2021)
Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O'Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist
The genetic basis for adaptation of model-designed syntrophic co-cultures. PLoS Comput. Biol. 15 (3) (2019)
Patrick V. Phaneuf, Dennis Gosting, Bernhard O. Palsson, Adam M. Feist
ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation. Nucleic Acids Res. 47 (Database-Issue) (2019)
Gabriela I. Guzmán, Connor A. Olson, Ying Hefner, Patrick V. Phaneuf, Edward Catoiu, Lais B. Crepaldi, Lucas Goldschmidt Micas, Bernhard O. Palsson, Adam M. Feist
Reframing gene essentiality in terms of adaptive flexibility. BMC Syst. Biol. 12 (1) (2018)