Endre T. Somogyi

Publication Activity (10 Years)

Years Active: 2015-2019
Publications (10 Years): 11

Top Topics

Programming Language

Numerical Analysis

Efficient Data Structures

Top Venues

SpringSim (TMS)

Publications

Geoffrey C. Fox, James A. Glazier, J. C. S. Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre T. Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, Shantenu Jha
Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation. CoRR (2019)
Geoffrey C. Fox, James A. Glazier, J. C. S. Kadupitiya, Vikram Jadhao, Minje Kim, Judy Qiu, James P. Sluka, Endre T. Somogyi, Madhav Marathe, Abhijin Adiga, Jiangzhuo Chen, Oliver Beckstein, Shantenu Jha
Learning Everywhere: Pervasive Machine Learning for Effective High-Performance Computation. IPDPS Workshops (2019)
Endre T. Somogyi
A Dynamic Non-Manifold Mesh Data Structure to Represent Biological Materials. J. WSCG 26 (1) (2018)
Endre T. Somogyi, James A. Glazier
A modeling and simulation language for biological cells with coupled mechanical and chemical processes. SpringSim (TMS) (2017)
Endre T. Somogyi, James A. Glazier
A modeling and simulation language for biological cells with coupled mechanical and chemical processes. CoRR (2017)
Endre T. Somogyi, James P. Sluka, James A. Glazier
Formalizing knowledge in multi-scale agent-based simulations. MoDELS (2016)
Endre T. Somogyi, Andrew Abi Mansour, Peter J. Ortoleva
ProtoMD: A prototyping toolkit for multiscale molecular dynamics. Comput. Phys. Commun. 202 (2016)
Endre T. Somogyi, Amit Hagar, James A. Glazier
Towards a multi-scale agent-based programming language methodology. WSC (2016)
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
libRoadRunner: A High Performance SBML Simulation and Analysis Library. CoRR (2015)
Jean-Marie C. Bouteiller, Zhuobo Feng, Alexander Onopa, Mike Huang, Eric Y. Hu, Endre T. Somogyi, Michel Baudry, Serge Bischoff, Theodore W. Berger
Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization. NER (2015)
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
libRoadRunner: a high performance SBML simulation and analysis library. Bioinform. 31 (20) (2015)