Peter J. Ortoleva

Publication Activity (10 Years)

Years Active: 2002-2016
Publications (10 Years): 1

Top Topics

Data Generation

Image Segmentation

Molecular Dynamics

Top Venues

Comput. Phys. Commun.

J. Chem. Inf. Model.

Publications

Endre T. Somogyi, Andrew Abi Mansour, Peter J. Ortoleva
ProtoMD: A prototyping toolkit for multiscale molecular dynamics. Comput. Phys. Commun. 202 (2016)
Stephen Pankavich, Peter J. Ortoleva
A Review of Two Multiscale Methods for the Simulation of Macromolecular Assemblies: Multiscale Perturbation and Multiscale Factorization. Comput. 3 (1) (2015)
Abhishek Singharoy, Harshad Joshi, Peter J. Ortoleva
Multiscale Macromolecular Simulation: Role of Evolving Ensembles. J. Chem. Inf. Model. 52 (10) (2012)
Yinglong Miao, Peter J. Ortoleva
Molecular dynamics/order parameter extrapolation for bionanosystem simulations. J. Comput. Chem. 30 (3) (2009)
Jingjun Sun, Kagan Tuncay, Alaa Abi-Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter J. Ortoleva
K12. Algorithms Mol. Biol. 2 (2007)
Kagan Tuncay, Lisa Ensman, Jingjun Sun, Alaa Abi-Haidar, Frank Stanley, Michael Trelinski, Peter J. Ortoleva
Transcriptional Regulatory Networks via Gene Ontology and Expression Data. Silico Biol. 7 (1) (2007)
Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva
Chromosome segregation in Escherichia coli division: A free energy-driven string model. Comput. Biol. Chem. 31 (4) (2007)
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory. BMC Bioinform. 8 (2007)
Dong-Hoon Sheen, Kagan Tuncay, Chang-Eob Baag, Peter J. Ortoleva
Parallel implementation of a velocity-stress staggered-grid finite-difference method for 2-D poroelastic wave propagation. Comput. Geosci. 32 (8) (2006)
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva
Efficient solution technique for solving the Poisson-Boltzmann equation. J. Comput. Chem. 25 (8) (2004)
Elizabeth L. Weitzke, Peter J. Ortoleva
Simulating cellular dynamics through a coupled transcription, translation, metabolic model. Comput. Biol. Chem. 27 (4-5) (2003)
Khuloud Jaqaman, Peter J. Ortoleva
New space warping method for the simulation of large-scale macromolecular conformational changes. J. Comput. Chem. 23 (4) (2002)