Stuart C. Sealfon

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 8

Top Topics

Systems Biology

Biochemical Networks

Top Venues

PLoS Comput. Biol.

Nat. Comput. Sci.

Publications

Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair, Clare M. Miller, Aliza B. Rubenstein, German Nudelman, Alicja Tadych, Chandra L. Theesfeld, Alexandria Vornholt, Mary-Catherine George, Felicia Ruffin, Michael Dagher, Daniel G. Chawla, Alessandra Soares-Schanoski, Rachel R. Spurbeck, Lishomwa C. Ndhlovu, Robert P. Sebra, Steven H. Kleinstein, Andrew G. Letizia, Irene Ramos, Vance G. Fowler, Christopher W. Woods, Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nat. Comput. Sci. 3 (9) (2023)
Xi Chen, Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair, Clare M. Miller, Aliza B. Rubenstein, German Nudelman, Alicja Tadych, Chandra L. Theesfeld, Alexandria Vornholt, Mary-Catherine George, Felicia Ruffin, Michael Dagher, Daniel G. Chawla, Alessandra Soares-Schanoski, Rachel R. Spurbeck, Lishomwa C. Ndhlovu, Robert P. Sebra, Steven H. Kleinstein, Andrew G. Letizia, Irene Ramos, Vance G. Fowler, Christopher W. Woods, Elena Zaslavsky, Olga G. Troyanskaya, Stuart C. Sealfon
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. Nat. Comput. Sci. 3 (7) (2023)
Miguel Fribourg, Diomedes E. Logothetis, Javier González-Maeso, Stuart C. Sealfon, Belén Galocha-Iragüen, Fernando Las-Heras Andrés, Vladimir Brezina
Correction: Elucidation of molecular kinetic schemes from macroscopic traces using system identification. PLoS Comput. Biol. 14 (10) (2018)
J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro
Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology. PLoS Comput. Biol. 14 (6) (2018)
Miguel Fribourg, Diomedes E. Logothetis, Javier González-Maeso, Stuart C. Sealfon, Belén Galocha-Iragüen, Fernando Las-Heras Andrés, Vladimir Brezina
Elucidation of molecular kinetic schemes from macroscopic traces using system identification. PLoS Comput. Biol. 13 (2) (2017)
Harold F. Gómez, Michael Hucka, Sarah M. Keating, German Nudelman, Dagmar Iber, Stuart C. Sealfon
MOCCASIN: converting MATLAB ODE models to SBML. Bioinform. 32 (12) (2016)
Marcus A. Badgeley, Stuart C. Sealfon, Maria D. Chikina
Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation. Bioinform. 31 (2) (2015)
Maria D. Chikina, Elena Zaslavsky, Stuart C. Sealfon
CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. Bioinform. 31 (10) (2015)
Omar P. Tabbaa, German Nudelman, Stuart C. Sealfon, Fernand Hayot, Ciriyam Jayaprakash
Noise propagation through extracellular signaling leads to fluctuations in gene expression. BMC Syst. Biol. 7 (2013)
Elena Zaslavsky, German Nudelman, Susanna Marquez, Uri Hershberg, Boris M. Hartmann, Juilee Thakar, Stuart C. Sealfon, Steven H. Kleinstein
Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. BMC Bioinform. 14 (S-6) (2013)
Yongchao Ge, Stuart C. Sealfon
-means and density peak finding. Bioinform. 28 (15) (2012)
István P. Sugár, Stuart C. Sealfon
Misty Mountain clustering: application to fast unsupervised flow cytometry gating. BMC Bioinform. 11 (2010)
Sonali Patil, Hanna Pincas, Jeremy Seto, German Nudelman, Irina Nudelman, Stuart C. Sealfon
Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase. BMC Syst. Biol. 4 (2010)
Yishai Shimoni, Marc Y. Fink, Soon-gang Choi, Stuart C. Sealfon
Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows. PLoS Comput. Biol. 6 (6) (2010)
Ganesh A. Viswanathan, Jeremy Seto, Sonali Patil, German Nudelman, Stuart C. Sealfon
Getting Started in Biological Pathway Construction and Analysis. PLoS Comput. Biol. 4 (2) (2008)
Ganesh A. Viswanathan, German Nudelman, Sonali Patil, Stuart C. Sealfon
BioPP: a tool for web-publication of biological networks. BMC Bioinform. 8 (2007)