Uri Hershberg

Publication Activity (10 Years)

Years Active: 2001-2017
Publications (10 Years): 7

Top Topics

Modeling Framework

Hepatitis C Virus

Labeling Problems

Top Venues

J. Complex Networks

Eng. Appl. Artif. Intell.

Publications

Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg
ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data. Bioinform. 33 (2) (2017)
Justin Melunis, Uri Hershberg
A spatially heterogeneous Gillespie algorithm modeling framework that enables individual molecule history and tracking. Eng. Appl. Artif. Intell. 62 (2017)
Mesut Yucel, Lev Muchnik, Uri Hershberg
Detection of network communities with memory-biased random walk algorithms. J. Complex Networks 5 (1) (2017)
Justin Melunis, Uri Hershberg
MiGHT, a multi-level Gillespie hybrid tracked modeling framework which allows for cellular and environmental adaptivity. SSCI (2017)
Yusuf Osmanlioglu, Santiago Ontañón, Uri Hershberg, Ali Shokoufandeh
Efficient approximation of labeling problems with applications to immune repertoire analysis. ICPR (2016)
Gregory W. Schwartz, Ali Shokoufandeh, Santiago Ontañón, Uri Hershberg
Using a novel clumpiness measure to unite data with metadata: Finding common sequence patterns in immune receptor germline V genes. Pattern Recognit. Lett. 74 (2016)
Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17 (S-13) (2016)
Elena Zaslavsky, German Nudelman, Susanna Marquez, Uri Hershberg, Boris M. Hartmann, Juilee Thakar, Stuart C. Sealfon, Steven H. Kleinstein
Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. BMC Bioinform. 14 (S-6) (2013)
Mohamed Uduman, Gur Yaari, Uri Hershberg, Jacob A. Stern, Mark J. Shlomchik, Steven H. Kleinstein
Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Avishalom Shalit, Tom Erez, Anna Deters, Uri Hershberg, Eran Shir, Sorin Solomon
Postext - A Mind for Society. Adaptive Agents and Multi-Agent Systems (2005)
Uri Hershberg
Useful examples and a new model of the immune system. Rev. d'Intelligence Artif. 17 (5-6) (2003)
Uri Hershberg, Sol Efroni
The immune system and other cognitive systems. Complex. 6 (5) (2001)