Lindsay G. Cowell

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 10

Top Topics

Infectious Disease

Weighted Average

Top Venues

J. Biomed. Semant.

Publications

Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig M. Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nat. Mach. Intell. 3 (11) (2021)
Jared Ostmeyer, Scott Christley, Lindsay G. Cowell
Dynamic Kernel Matching for Non-conforming Data: A Case Study of T-cell Receptor Datasets. CoRR (2021)
Shane Babcock, John Beverley, Lindsay G. Cowell, Barry Smith
The Infectious Disease Ontology in the age of COVID-19. J. Biomed. Semant. 12 (1) (2021)
Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. Frontiers Big Data 3 (2020)
Jared Ostmeyer, Lindsay G. Cowell
Machine learning on sequential data using a recurrent weighted average. Neurocomputing 331 (2019)
Jared Ostmeyer, Scott Christley, William Rounds, Inimary T. Toby, Benjamin M. Greenberg, Nancy Monson, Lindsay G. Cowell
Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis. BMC Bioinform. 18 (1) (2017)
Trygve Bakken, Lindsay G. Cowell, Brian D. Aevermann, Mark Novotny, Rebecca Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison M. McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed Lein, Richard H. Scheuermann
Cell type discovery and representation in the era of high-content single cell phenotyping. BMC Bioinform. 18 (S-17) (2017)
Jared Ostmeyer, Lindsay G. Cowell
Machine Learning on Sequential Data Using a Recurrent Weighted Average. CoRR (2017)
Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy Monson, William Rounds, Florian Rubelt, Walter Scarborough, Richard H. Scheuermann, Lindsay G. Cowell
VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data. BMC Bioinform. 18 (1) (2017)
Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17 (S-13) (2016)
Mikhail K. Levin, Lindsay G. Cowell
owlcpp: a C++ library for working with OWL ontologies. J. Biomed. Semant. 6 (2015)
Albert Goldfain, Barry Smith, Lindsay G. Cowell
Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports. ICBO (2014)
Claire L. Gordon, Stephanie Pouch, Lindsay G. Cowell, Mary Regina Boland, Heather L. Platt, Albert Goldfain, Chunhua Weng
Design and Evaluation of a Bacterial Clinical Infectious Diseases Ontology. AMIA (2013)
Albert Goldfain, Lindsay G. Cowell, Barry Smith
Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository. ICBO (2012)
Anna Maria Masci, Mikhail K. Levin, Alan Ruttenberg, Lindsay G. Cowell
Connecting Ontologies for the Representation of Biological Pathways. ICBO (2011)
Terrence F. Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G. Cowell, Judith A. Blake, Christopher J. Mungall, Alexander D. Diehl
Logical Development of the Cell Ontology. BMC Bioinform. 12 (2011)
Albert Goldfain, Barry Smith, Lindsay G. Cowell
Towards an ontological representation of resistance: The case of MRSA. J. Biomed. Informatics 44 (1) (2011)
Mikhail K. Levin, Alan Ruttenberg, Anna Maria Masci, Lindsay G. Cowell
, a C++ Library for Working with OWL Ontologies. ICBO (2011)
Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell
Bridging Multiple Ontologies: Representation of the Liver Immune Response. ICBO (2011)
Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall
Hematopoietic cell types: Prototype for a revised cell ontology. J. Biomed. Informatics 44 (1) (2011)
Albert Goldfain, Barry Smith, Lindsay G. Cowell
Dispositions and the Infectious Disease Ontology. FOIS (2010)
Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell
An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinform. 10 (2009)
Joseph M. Volpe, Lindsay G. Cowell, Thomas B. Kepler
SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinform. 22 (4) (2006)