SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations.
Joseph M. VolpeLindsay G. CowellThomas B. KeplerPublished in: Bioinform. (2006)
Keyphrases
- optimization algorithm
- computational complexity
- preprocessing
- times faster
- matching algorithm
- detection algorithm
- learning algorithm
- k means
- experimental evaluation
- linear programming
- computationally efficient
- hardware implementation
- dynamic programming
- search space
- worst case
- theoretical analysis
- cost function
- improved algorithm
- inference mechanism
- simulated annealing
- neural network
- computational cost
- ant colony optimization
- tree structure
- lower bound
- parallel implementation
- sequence alignment
- junction tree