Guy-Bart Stan

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 27

Top Topics

Gene Expression

Biological Systems

Diffusion Model

Top Venues

J. Integr. Bioinform.

IEEE Trans. Control. Netw. Syst.

Publications

Xiangyu Zhao, Zehui Li, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao
Enhancing Real-World Complex Network Representations with Hyperedge Augmentation. CoRR (2024)
Zehui Li, Vallijah Subasri, Guy-Bart Stan, Yiren Zhao, Bo Wang
GV-Rep: A Large-Scale Dataset for Genetic Variant Representation Learning. CoRR (2024)
Zehui Li, Yuhao Ni, William A. V. Beardall, Guoxuan Xia, Akashaditya Das, Guy-Bart Stan, Yiren Zhao
DiscDiff: Latent Diffusion Model for DNA Sequence Generation. CoRR (2024)
Eszter Csibra, Guy-Bart Stan
Parsley: a web app for parsing data from plate readers. Bioinform. 39 (12) (2023)
Zehui Li, Yuhao Ni, Tim August B. Huygelen, Akashaditya Das, Guoxuan Xia, Guy-Bart Stan, Yiren Zhao
Latent Diffusion Model for DNA Sequence Generation. CoRR (2023)
Abhilash Patel, Guy-Bart Stan
Exploiting Resource Constraints for Controlling Biomolecular Circuits. CDC (2023)
Zehui Li, Akashaditya Das, William A. V. Beardall, Yiren Zhao, Guy-Bart Stan
Genomic Interpreter: A Hierarchical Genomic Deep Neural Network with 1D Shifted Window Transformer. CoRR (2023)
Zehui Li, Xiangyu Zhao, Mingzhu Shen, Guy-Bart Stan, Pietro Liò, Yiren Zhao
Hybrid Graph: A Unified Graph Representation with Datasets and Benchmarks for Complex Graphs. CoRR (2023)
Giansimone Perrino, Guy-Bart Stan
Robust set-point regulation of gene expression using resource competition couplings in mammalian cells. ACC (2022)
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
Stationary Distributions of Continuous-Time Markov Chains: A Review of Theory and Truncation-Based Approximations. SIAM Rev. 63 (1) (2021)
Hasan Baig, Pedro Fontanarossa, Vishwesh V. Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18 (3) (2021)
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
Approximations of Countably Infinite Linear Programs over Bounded Measure Spaces. SIAM J. Optim. 31 (1) (2021)
Hasan Baig, Pedro Fontanarrosa, Vishwesh V. Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Gambardella, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17 (2-3) (2020)
Zoltán A. Tuza, Guy-Bart Stan
An Automatic Sparse Model Estimation Method Guided by Constraints That Encode System Properties. ECC (2019)
Curtis Madsen, Ángel Goñi Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16 (2) (2019)
Juan Kuntz, Philipp Thomas, Guy-Bart Stan, Mauricio Barahona
The Exit Time Finite State Projection Scheme: Bounding Exit Distributions and Occupation Measures of Continuous-Time Markov Chains. SIAM J. Sci. Comput. 41 (2) (2019)
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15 (1) (2018)
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
Identification of Nonlinear State-Space Systems From Heterogeneous Datasets. IEEE Trans. Control. Netw. Syst. 5 (2) (2018)
Zoltán A. Tuza, Guy-Bart Stan
Characterization of Biologically Relevant Network Structures form Time-series Data. CoRR (2018)
Neave O'Clery, Ye Yuan, Guy-Bart Stan, Mauricio Barahona
Global Network Prediction from Local Node Dynamics. CoRR (2018)
Zoltán A. Tuza, Guy-Bart Stan
Characterization of Biologically Relevant Network Structures form Time-series Data. CDC (2018)
Ye Yuan, Anurag Rai, Enoch Yeung, Guy-Bart Stan, Sean Warnick, Jorge M. Gonçalves
A Minimal Realization Technique for the Dynamical Structure Function of a Class of LTI Systems. IEEE Trans. Control. Netw. Syst. 4 (2) (2017)
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
Shaping pulses to control bistable systems: Analysis, computation and counterexamples. Autom. 63 (2016)
Juan Kuntz, Michela Ottobre, Guy-Bart Stan, Mauricio Barahona
Bounding Stationary Averages of Polynomial Diffusions via Semidefinite Programming. SIAM J. Sci. Comput. 38 (6) (2016)
Wei Pan, Filippo Menolascina, Guy-Bart Stan
Online model selection for synthetic gene networks. CDC (2016)
Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni
Biomolecular implementation of nonlinear system theoretic operators. ECC (2016)
Wei Pan, Ye Yuan, Jorge M. Gonçalves, Guy-Bart Stan
A Sparse Bayesian Approach to the Identification of Nonlinear State-Space Systems. IEEE Trans. Autom. Control. 61 (1) (2016)
Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan
Online fault diagnosis for nonlinear power systems. Autom. 55 (2015)
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
Identifying Biochemical Reaction Networks From Heterogeneous Datasets. CoRR (2015)
Wei Pan, Ye Yuan, Lennart Ljung, Jorge M. Gonçalves, Guy-Bart Stan
Identifying biochemical reaction networks from heterogeneous datasets. CDC (2015)
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
Shaping pulses to control bistable biological systems. ACC (2015)
Aivar Sootla, Diego A. Oyarzún, David Angeli, Guy-Bart Stan
Shaping Pulses to Control Multi-Stable Biological Systems. CoRR (2014)
Rhys J. R. Algar, Tom Ellis, Guy-Bart Stan
Modelling essential interactions between synthetic genes and their chassis cell. CDC (2014)
Wei Pan, Aivar Sootla, Guy-Bart Stan
Distributed Reconstruction of Nonlinear Networks: An ADMM Approach. CoRR (2014)
Jean-Baptiste Lugagne, Diego A. Oyarzún, Guy-Bart Stan
Stochastic simulation of enzymatic reactions under transcriptional feedback regulation. ECC (2013)
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
Toggling a Genetic Switch Using Reinforcement Learning CoRR (2013)
Alejandro Vignoni, Diego A. Oyarzún, Jesús Picó, Guy-Bart Stan
Control of protein concentrations in heterogeneous cell populations. ECC (2013)
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
On periodic reference tracking using batch-mode reinforcement learning with application to gene regulatory network control. CDC (2013)
Ye Yuan, Guy-Bart Stan, Ling Shi, Mauricio Barahona, Jorge M. Goncalves
Decentralised minimum-time consensus. Autom. 49 (5) (2013)
Wei Pan, Ye Yuan, Henrik Sandberg, Jorge M. Gonçalves, Guy-Bart Stan
Real-time fault diagnosis for large-scale nonlinear power networks. CDC (2013)
Aivar Sootla, Natalja Strelkowa, Damien Ernst, Mauricio Barahona, Guy-Bart Stan
On Periodic Reference Tracking Using Batch-Mode Reinforcement Learning with Application to Gene Regulatory Network Control CoRR (2013)
Wei Pan, Ye Yuan, Jorge M. Goncalves, Guy-Bart Stan
Reconstruction of arbitrary biochemical reaction networks: A compressive sensing approach. CDC (2012)
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Goncalves
Minimal realization of the dynamical structure function and its application to network reconstruction CoRR (2012)
Diego A. Oyarzún, Guy-Bart Stan
Design constraints in an operon circuit for engineered control of metabolic networks. CDC (2012)
J. Adebayo, T. Southwick, Vasu Chetty, Enoch Yeung, Ye Yuan, Jorge M. Goncalves, Julianne H. Grose, J. Prince, Guy-Bart Stan, Sean Warnick
Dynamical structure function identifiability conditions enabling signal structure reconstruction. CDC (2012)
Kim H. Parker, Jordi Alastruey, Guy-Bart Stan
Arterial reservoir-excess pressure and ventricular work. Medical Biol. Eng. Comput. 50 (4) (2012)
Diego A. Oyarzún, Guy-Bart Stan
Design tradeoffs in a synthetic gene control circuit for metabolic networks. ACC (2012)
Abdullah Omar Hamadeh, Guy-Bart Stan, Rodolphe Sepulchre, Jorge M. Goncalves
Global State Synchronization in Networks of Cyclic Feedback Systems. IEEE Trans. Autom. Control. 57 (2) (2012)
Wei Pan, Ye Yuan, Guy-Bart Stan
Reconstruction of Arbitrary Biochemical Reaction Networks: A Compressive Sensing Approach CoRR (2012)
Vishwesh V. Kulkarni, Marc Riedel, Guy-Bart Stan
Networks of passive oscillators. Allerton (2011)
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Goncalves
Robust dynamical network structure reconstruction. Autom. 47 (6) (2011)
Ye Yuan, Guy-Bart Stan, Mauricio Barahona, Ling Shi, Jorge M. Goncalves
Decentralised minimal-time consensus. CDC/ECC (2011)
Hai-Tao Zhang, Michael Z. Q. Chen, Guy-Bart Stan
Fast Consensus Via Predictive Pinning Control. IEEE Trans. Circuits Syst. I Regul. Pap. (9) (2011)
Ye Yuan, Guy-Bart Stan, Sean Warnick, Jorge M. Goncalves
Robust dynamical network reconstruction. CDC (2010)
Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Goncalves
Constructive synchronization of networked feedback systems. CDC (2010)
Abdullah Omar Hamadeh, Guy-Bart Stan, Jorge M. Goncalves
Robust synchronization in networks of cyclic feedback systems. CDC (2008)
Russell Howes, Lee John Eccleston, Jorge M. Goncalves, Guy-Bart Stan, Sean Warnick
Dynamical structure analysis of sparsity and minimality heuristics for reconstruction of biochemical networks. CDC (2008)
Guy-Bart Stan, Rodolphe Sepulchre
Analysis of Interconnected Oscillators by Dissipativity Theory. IEEE Trans. Autom. Control. 52 (2) (2007)
Guy-Bart Stan, Abdullah Omar Hamadeh, Rodolphe Sepulchre, Jorge M. Gonçalves
Output synchronization in networks of cyclic biochemical oscillators. ACC (2007)
Damien Ernst, Guy-Bart Stan, Jorge M. Gonçalves, Louis Wehenkel
Clinical data based optimal STI strategies for HIV: a reinforcement learning approach. CDC (2006)
Rodolphe Sepulchre, Guy-Bart Stan
Feedback mechanisms for global oscillations in Lure systems. Syst. Control. Lett. 54 (8) (2005)
Guy-Bart Stan, Rodolphe Sepulchre
Dissipativity characterization of a class of oscillators and networks of oscillators. CDC (2003)