Declan G. Bates

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 29

Top Topics

Resource Allocation

Gene Regulatory

Feedback Control

Top Venues

IEEE Control. Syst. Lett.

Publications

Alexander P. S. Darlington, Ahmad A. Mannan, Declan G. Bates
Natural Host Feedback Simplifies the Design of Metabolic Switches. CDC (2023)
Laurence Legon, Christophe Corre, Declan G. Bates, Ahmad A. Mannan
gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs. Bioinform. 38 (14) (2022)
Alexander P. S. Darlington, Declan G. Bates
Performance and robustness analysis of control strategies for ameliorating cellular host-circuit interactions. ECC (2022)
Sonal Mistry, Bindi S. Brook, Sina Saffaran, Marc Chikhani, David M. Hannon, John G. Laffey, Tim E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates
A computational cardiopulmonary physiology simulator accurately predicts individual patient responses to changes in mechanical ventilator settings. EMBC (2022)
Liam Weaver, Sina Saffaran, Marc Chikhani, John G. Laffey, Timothy E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates
Why Reduced Inspiratory Pressure Could Determine Success of Non-Invasive Ventilation in Acute Hypoxic Respiratory Failure. EMBC (2022)
C. Daudre-Vignier, Marianna Laviola, Anup Das, Declan G. Bates, Jonathan G. Hardman
Identification of an optimal CPR chest compression protocol. EMBC (2021)
Mathias Foo, Declan G. Bates, Ozgur E. Akman
A simplified modelling framework facilitates more complex representations of plant circadian clocks. PLoS Comput. Biol. 16 (3) (2020)
Jack E. Bowyer, Chloe Ding, Benjamin H. Weinberg, Wilson W. Wong, Declan G. Bates
A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits. PLoS Comput. Biol. 16 (12) (2020)
Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
On the stability of nucleic acid feedback control systems. Autom. 119 (2020)
Mathias Foo, Jongrae Kim, Declan G. Bates
Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (2) (2019)
Marianna Laviola, Christian Niklas, Husam Alahmadi, Anup Das, Declan G. Bates, Jonathan G. Hardman
High oxygen fraction during airway opening is key to effective airway rescue in obese subjects. EMBC (2019)
Timothy E. Scott, Mainul Haque, Anup Das, Ian Cliff, Declan G. Bates, Jonathan G. Hardman
Efficacy of continuous positive airway pressure in casualties suffering from primary blast lung injury: A modeling study. EMBC (2019)
Alexander P. S. Darlington, Declan G. Bates
Combining transcriptional and translational resource allocation controllers for synthetic circuits. CDC (2019)
Alexander P. S. Darlington, Jongrae Kim, Declan G. Bates
Robustness Analysis of a Synthetic Translational Resource Allocation Controller. IEEE Control. Syst. Lett. 3 (2) (2019)
Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
PID and State Feedback Controllers Using DNA Strand Displacement Reactions. IEEE Control. Syst. Lett. 3 (4) (2019)
Nuno M. G. Paulino, Mathie Foo, Jongmin Kim, Declan G. Bates
Uncertainty Modelling and Stability Robustness Analysis of Nucleic Acid-Based Feedback Control Systems. CDC (2018)
Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates
On the stability of nucleic acid feedback controllers. CoRR (2018)
Alexander P. S. Darlington, Declan G. Bates
On the design of integral translational resource allocation controllers for synthetic cellular circuitry. CDC (2018)
Sina Saffaran, Anup Das, Jonathan G. Hardman, Nadir Yehya, Declan G. Bates
Development and validation of a computational simulator for pediatric acute respiratory distress syndrome patients. EMBC (2017)
Marianna Laviola, Anup Das, Marc Chikhani, Declan G. Bates, Jonathan G. Hardman
Investigating the effect of cardiac oscillations and deadspace gas mixing during apnea using computer simulation. EMBC (2017)
Mathias Foo, Declan G. Bates, Jongrae Kim
System identification of gene regulatory networks for perturbation mitigation via feedback control. ICNSC (2017)
Mathias Foo, Jongrae Kim, Rucha Sawlekar, Declan G. Bates
Design of an embedded inverse-feedforward biomolecular tracking controller for enzymatic reaction processes. Comput. Chem. Eng. 99 (2017)
Rucha Sawlekar, Mathias Foo, Declan G. Bates
Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties. BioCAS (2016)
Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Jonathan G. Hardman, Declan G. Bates
Creating virtual ARDS patients. EMBC (2016)
Jack E. Bowyer, Jia Zhao, Pakpoom Subsoontorn, Wilson Wong, Susan Rosser, Declan G. Bates
Mechanistic Modeling of a Rewritable Recombinase Addressable Data Module. IEEE Trans. Biomed. Circuits Syst. 10 (6) (2016)
Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni
Biomolecular implementation of nonlinear system theoretic operators. ECC (2016)
Alexander Darlington, Declan G. Bates
Host-aware modelling of a synthetic genetic oscillator. EMBC (2016)
Mathias Foo, Rucha Sawlekar, Vishwesh V. Kulkarni, Declan G. Bates
Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions. EMBC (2016)
Jack E. Bowyer, Victoria Hsiao, Declan G. Bates
Development and experimental validation of a mechanistic model of a recombinase-based temporal logic gate. BioCAS (2016)
Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Tayyba Ali, Oana Cole, Jonathan G. Hardman, Declan G. Bates
Development of an integrated model of cardiovascular and pulmonary physiology for the evaluation of mechanical ventilation strategies. EMBC (2015)
Jack E. Bowyer, Jia Zhao, Susan Rosser, Sean Colloms, Declan G. Bates
Development and experimental validation of a mechanistic model of in vitro DNA recombination. EMBC (2015)
Mariaconcetta Bilotta, Carlo Cosentino, Declan G. Bates, Luca Salerno, Francesco Amato
Retroactivity analysis of a chemical reaction network module for the subtraction of molecular fluxes. EMBC (2015)
Rucha Sawlekar, Francesco Montefusco, Vishwesh V. Kulkarni, Declan G. Bates
Biomolecular implementation of a quasi sliding mode feedback controller based on DNA strand displacement reactions. EMBC (2015)
Anup Das, Prathyush P. Menon, Jonathan G. Hardman, Declan G. Bates
Optimization of Mechanical Ventilator Settings for Pulmonary Disease States. IEEE Trans. Biomed. Eng. 60 (6) (2013)
Luca Salerno, Carlo Cosentino, Alessio Merola, Declan G. Bates, Francesco Amato
Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics. BMC Syst. Biol. 7 (2013)
Carlo Cosentino, Luca Salerno, Antonio Passanti, Alessio Merola, Declan G. Bates, Francesco Amato
Structural Bistability of the GAL Regulatory Network and Characterization of its Domains of Attraction. J. Comput. Biol. 19 (2) (2012)
Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates
Worst Case Analysis of a Launcher Vehicle Using Surrogate Models. ROCOND (2012)
Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates
Robust Safety Margin Assessment and Constrained Worst-Case Analysis of a Launcher Vehicle. ROCOND (2012)
Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer
On the role of ultrasensitivity in biomolecular control systems. CDC (2012)
Francesco Montefusco, Carlo Cosentino, Francesco Amato, Declan G. Bates
Reverse-engineering biological interaction networks from noisy data using Regularized Least Squares and Instrumental Variables. CDC/ECC (2011)
Yun-Bo Zhao, Jongrae Kim, Declan G. Bates
LFT-free μ-analysis of LTI/LPTV systems. CACSD (2011)
Nikolay V. Kotov, Declan G. Bates, Antonina N. Gizatullina, Bulat Gilaziev, Rustem N. Khairullin, Michael Z. Q. Chen, Ignat Drozdov, Yoshinori Umezawa, Christian Hundhausen, Alexey Aleksandrov, Xing-Gang Yan, Sarah K. Spurgeon, C. Mark Smales, Najl V. Valeyev
Computational modelling elucidates the mechanism of ciliary regulation in health and disease. BMC Syst. Biol. 5 (2011)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho
Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data. Bioinform. 24 (10) (2008)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite
Evaluation of Stochastic Effects on Biomolecular Networks Using the Generalized Nyquist Stability Criterion. IEEE Trans. Autom. Control. 53 (8) (2008)
Najl V. Valeyev, Declan G. Bates, Pat Heslop-Harrison, Ian Postlethwaite, Nikolay V. Kotov
Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach. BMC Syst. Biol. 2 (2008)
Sonny Martin, Iain Wallace, Declan G. Bates
Development and validation of an aero-engine simulation model for advanced controller design. ACC (2008)
Najl V. Valeyev, Nikolai V. Kotov, Ian Postlethwaite, Declan G. Bates
Mathematical modelling of multi-site protein-ligand interactions. BMC Syst. Biol. 1 (S-1) (2007)
Declan G. Bates, Sajjad Fekri, Prathyush P. Menon, Ian Postlethwaite
On the robustness analysis of nonlinear systems subject to time-invariant and/or time-varying uncertainty. IEEE Congress on Evolutionary Computation (2007)
Sajjad Fekri, Declan G. Bates, Ian Postlethwaite
Linear vs. Nonlinear Robustness Analysis: A Case Study. CCA (2007)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho
Least-squares methods for identifying biochemical regulatory networks from noisy measurements. BMC Bioinform. 8 (2007)
Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
Deterministic versus evolutionary optimisation methods for nonlinear robustness analysis of flight control laws. IEEE Congress on Evolutionary Computation (2007)
Jongrae Kim, Pat Heslop-Harrison, Ian Postlethwaite, Declan G. Bates
Aggregation Make cAMP Oscillations Robust. PLoS Comput. Biol. 3 (11) (2007)
Andrés Marcos, Declan G. Bates, Ian Postlethwaite
A symbolic matrix decomposition algorithm for reduced order linear fractional transformation modelling. Autom. 43 (7) (2007)
Prathyush P. Menon, Guido Herrmann, Matthew C. Turner, Declan G. Bates, Ian Postlethwaite
General Anti-windup synthesis for input constrained nonlinear systems controlled using nonlinear dynamic inversion. CDC (2006)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite
Robustness analysis of linear periodic time-varying systems subject to structured uncertainty. Syst. Control. Lett. 55 (9) (2006)
Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
A deterministic hybrid optimisation algorithm for nonlinear flight control systems analysis. ACC (2006)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite
Nonlinear robust performance analysis using complex-step gradient approximation. Autom. 42 (1) (2006)
Prathyush P. Menon, Jongrae Kim, Declan G. Bates, Ian Postlethwaite
Clearance of Nonlinear Flight Control Laws Using Hybrid Evolutionary Optimization. IEEE Trans. Evol. Comput. 10 (6) (2006)
Andrés Marcos, Declan G. Bates, Ian Postlethwaite
Control oriented uncertainty modelling using μ sensitivities and skewed μ analysis tools. CDC/ECC (2005)
Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite
Hybrid Evolutionary Optimisation Methods for the Clearance of Nonlinear Flight Control Laws. CDC/ECC (2005)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite
Nonlinear Robust Performance Analysis using Gradient-Based Optimisation - An Aeroelastic Case-Study. CDC/ECC (2005)
Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Lan Ma, Pablo A. Iglesias
Robustness Analysis of Biochemical Networks using μ-Analysis and Hybrid Optimisation. CDC/ECC (2005)
Declan G. Bates, Thomas Mannchen, Ridwan Kureemun, Ian Postlethwaite
μ-Tools for the clearance of flight control laws. ACC (2004)
Thomas Mannchen, Declan G. Bates
Improved computation of mixed μ bounds for flight control law analysis. ECC (2003)
Declan G. Bates, Ridwan Kureemun, Thomas Mannchen
Clearance of the VAAC Harrier CL002 flight control law using μ-analysis techniques. ECC (2003)
Nabil Aouf, Declan G. Bates
Scheduling of a partitioned IFPC design for a VSTOL aircraft. ACC (2002)
Declan G. Bates
H∞, optimisation for L1 performance objectives. ECC (2001)
S. L. Gatley, Declan G. Bates, M. J. Hayes, Ian Postlethwaite
Robustness analysis of integrated flight and propulsion control systems for V/STOL aircraft. ECC (2001)
Matthew C. Turner, Declan G. Bates, Ian Postlethwaite
A conditioning strategy for performance improvement of an integrated flight and propulsion control system for a V/STOL aircraft. ECC (2001)
Martin J. Hayes, Declan G. Bates, Anthony M. Holohan
New algorithms for upper and lower bounds on the mixed/real structured singular value. ECC (2001)