Ozgur E. Akman

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 14

Top Topics

Stochastic Differential Equations

Systems Biology

Measurement Error

Top Venues

GECCO (Companion)

BMC Syst. Biol.

PLoS Comput. Biol.

Publications

Ozgur E. Akman, Kevin Doherty, Benjamin J. Wareham
BDEtools: A MATLAB Package for Boolean Delay Equation Modeling. J. Comput. Biol. 30 (1) (2023)
Dominic M. Dunstan, Mark P. Richardson, Eugenio Abela, Ozgur E. Akman, Marc Goodfellow
Global nonlinear approach for mapping parameters of neural mass models. PLoS Comput. Biol. 19 (3) (2023)
Melike D. Karatas, Ozgur E. Akman, Jonathan E. Fieldsend
Towards population-based fitness landscape analysis using local optima networks. GECCO Companion (2021)
Mathias Foo, Declan G. Bates, Ozgur E. Akman
A simplified modelling framework facilitates more complex representations of plant circadian clocks. PLoS Comput. Biol. 16 (3) (2020)
Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman
SODECL: An Open-Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel. ACM Trans. Math. Softw. 46 (3) (2020)
Richard A. Clement, Ozgur E. Akman
Slow-fast control of eye movements: an instance of Zeeman's model for an action. Biol. Cybern. 114 (4-5) (2020)
Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend
Landscape analysis under measurement error. GECCO (Companion) (2019)
Eleftherios Avramidis, Marta Lalik, Ozgur E. Akman
SODECL: An Open Source Library for Calculating Multiple Orbits of a System of Stochastic Differential Equations in Parallel. CoRR (2019)
Kevin Anthony James Doherty, Khulood AlYahya, Jonathan E. Fieldsend, Ozgur E. Akman
Voronoi-based archive sampling for robust optimisation. GECCO (Companion) (2018)
Khulood AlYahya, Kevin Anthony James Doherty, Ozgur E. Akman, Jonathan E. Fieldsend
Robust multi-modal optimisation. GECCO (Companion) (2018)
Eleftherios Avramidis, Ozgur E. Akman
Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination. BMC Syst. Biol. 11 (1) (2017)
Kevin Anthony James Doherty, Khulood AlYahya, Ozgur E. Akman, Jonathan E. Fieldsend
Optimisation and landscape analysis of computational biology models: a case study. GECCO (Companion) (2017)
Khulood AlYahya, Kevin Anthony James Doherty, Jonathan E. Fieldsend, Ozgur E. Akman
On the exploitation of search history and accumulative sampling in robust optimisation. GECCO (Companion) (2017)
Stuart Aitken, Alastair M. Kilpatrick, Ozgur E. Akman
Dizzy-Beats: a Bayesian evidence analysis tool for systems biology. Bioinform. 31 (11) (2015)
Suhaib Mohammed, Ozgur E. Akman, Zheng Rong Yang
A consensus approach to predict regulatory interactions. BMEI (2014)
Stuart Aitken, Ozgur E. Akman
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model. BMC Syst. Biol. 7 (2013)
Richard R. Adams, Allan Clark, Azusa Yamaguchi, Neil Hanlon, Nikos Tsorman, Shakir Ali, Galina Lebedeva, Alexey Goltsov, Anatoly A. Sorokin, Ozgur E. Akman, Carl Troein, Andrew J. Millar, Igor Goryanin, Stephen Gilmore
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology. Bioinform. 29 (5) (2013)
Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer
On the role of ultrasensitivity in biomolecular control systems. CDC (2012)
Ozgur E. Akman, Maria Luisa Guerriero, Laurence Loewe, Carl Troein
Complementary approaches to understanding the plant circadian clock FBTC (2010)
Ozgur E. Akman, David A. Rand, Paul E. Brown, Andrew J. Millar
Robustness from flexibility in the fungal circadian clock. BMC Syst. Biol. 4 (2010)
Ozgur E. Akman, Federica Ciocchetta, Andrea Degasperi, Maria Luisa Guerriero
Circadian Network. CMSB (2009)
Ozgur E. Akman, David S. Broomhead, Richard A. Clement, Richard V. Abadi
Nonlinear time series analysis of jerk congenital nystagmus. J. Comput. Neurosci. 21 (2) (2006)
Dmitry Laptev, Ozgur E. Akman, Richard A. Clement
Stability of the saccadic oculomotor system. Biol. Cybern. 95 (3) (2006)