Steven B. Haase

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 4

Top Topics

Topological Features

Evaluation Method

Biological Processes

Gene Expression

Top Venues

Proc. Natl. Acad. Sci. USA

PLoS Comput. Biol.

Publications

Francis C. Motta, Robert C. Moseley, Bree Cummins, Anastasia Deckard, Steven B. Haase
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC Bioinform. 23 (1) (2022)
Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. 18 (10) (2022)
Alexander Zaitzeff, Nick Leiby, Francis Motta, Steven B. Haase, Jed Singer
Improved datasets and evaluation methods for the automatic prediction of DNA-binding proteins. Bioinform. 38 (1) (2021)
Francis Motta, John Harer, Nick Leiby, Franco Marinozzi, Scott Novotney, Gabe Rocklin, Jed Singer, Devin Strickland, Matt Vaughn, Christopher J. Tralie, Rossella Bedini, Fabiano Bini, Gilberto Bini, Hamed Eramian, Marcio Gameiro, Steven B. Haase, Hugh Haddox
Hyperparameter Optimization of Topological Features for Machine Learning Applications. ICMLA (2019)
Jose A. Perea, Anastasia Deckard, Steven B. Haase, John Harer
SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. BMC Bioinform. 16 (2015)
Anastasia Deckard, Ron C. Anafi, John B. Hogenesch, Steven B. Haase, John Harer
Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinform. 29 (24) (2013)
Xin Guo, Allister Bernard, David A. Orlando, Steven B. Haase, Alexander J. Hartemink
Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program. Proc. Natl. Acad. Sci. USA 110 (10) (2013)
Hsiu J. Ho, Tsung-I Lin, Hannah H. Chang, Steven B. Haase, Sui Huang, Saumyadipta Pyne
Parametric modeling of cellular state transitions as measured with flow cytometry. BMC Bioinform. 13 (S-5) (2012)
Michael B. Mayhew, Xin Guo, Steven B. Haase, Alexander J. Hartemink
Close Encounters of the Collaborative Kind. Computer 45 (3) (2012)
Saumyadipta Pyne, Steven B. Haase, Hsiu J. Ho, Tsung-I Lin
Parametric modeling of cellular state transitions as measured with flow cytometry. ICCABS (2011)
Michael B. Mayhew, Joshua W. Robinson, Boyoun Jung, Steven B. Haase, Alexander J. Hartemink
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments. Bioinform. 27 (13) (2011)