SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.
Jose A. PereaAnastasia DeckardSteven B. HaaseJohn HarerPublished in: BMC Bioinform. (2015)
Keyphrases
- gene expression
- sliding window
- periodic patterns
- data streams
- microarray
- gene expression data
- microarray data
- fixed size
- gene expression data analysis
- gene expression patterns
- gene regulation
- space efficient
- gene expression analysis
- high throughput
- variable size
- biological processes
- biological networks
- differentially expressed genes
- dna microarray
- gene expression profiles
- walsh hadamard transform
- analysis of gene expression
- regulatory networks
- transcription factors
- binding sites
- gene selection
- itemsets
- high dimensional
- gene interactions
- data mining techniques
- mutual information
- data structure
- feature selection