Anaïs Baudot

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 12

Top Topics

Biological Networks

Link Prediction

Top Venues

PLoS Comput. Biol.

Publications

Morgane Térézol, Anaïs Baudot, Ozan Ozisik
ODAMNet: A Python package to identify molecular relationships between chemicals and rare diseases using overlap, active module and random walk approaches. SoftwareX 26 (2024)
Nadine Ben Boina, Brigitte Mossé, Anaïs Baudot, Elisabeth Remy
Refining Boolean models with the partial most permissive scheme. CoRR (2024)
Anthony Baptista, Galadriel Brière, Anaïs Baudot
Random walk with restart on multilayer networks: from node prioritisation to supervised link prediction and beyond. BMC Bioinform. 25 (1) (2024)
Anthony Baptista, Rubén J. Sánchez-García, Anaïs Baudot, Ginestra Bianconi
Zoo Guide to Network Embedding. CoRR (2023)
Judith Lambert, Anne-Louise Leutenegger, Anne-Sophie Jannot, Anaïs Baudot
Tracking clusters of patients over time enables extracting information from medico-administrative databases. J. Biomed. Informatics 139 (2023)
Judith Lambert, Anne-Louise Leutenegger, Anne-Sophie Jannot, Anaïs Baudot
Tracking Temporal Clusters from Patient Networks. MIE (2022)
Ozan Ozisik, Morgane Térézol, Anaïs Baudot
orsum: a Python package for filtering and comparing enrichment analyses using a simple principle. BMC Bioinform. 23 (1) (2022)
Anthony Baptista, Aitor González, Anaïs Baudot
Universal Multilayer Network Exploration by Random Walk with Restart. CoRR (2021)
Elva María Novoa-del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier, Laurent Tichit, Anaïs Baudot
A multi-objective genetic algorithm to find active modules in multiplex biological networks. PLoS Comput. Biol. 17 (8) (2021)
Léo Pio-Lopez, Alberto Valdeolivas, Laurent Tichit, Elisabeth Remy, Anaïs Baudot
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach. CoRR (2020)
Alberto Valdeolivas, Laurent Tichit, Claire Navarro, Sophie Perrin, Gaëlle Odelin, Nicolas Levy, Pierre Cau, Elisabeth Remy, Anaïs Baudot
Random walk with restart on multiplex and heterogeneous biological networks. Bioinform. 35 (3) (2019)
Gilles Didier, Alberto Valdeolivas, Anaïs Baudot
Identifying communities from multiplex biological networks by randomized optimization of modularity. F1000Research 7 (2018)
Åsmund Flobak, Anaïs Baudot, Elisabeth Remy, Liv Thommesen, Denis Thieffry, Martin Kuiper, Astrid Lægreid
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PLoS Comput. Biol. 11 (8) (2015)
Sushil Tripathi, Åsmund Flobak, Konika Chawla, Anaïs Baudot, Torunn Bruland, Liv Thommesen, Martin Kuiper, Astrid Lægreid
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms. BMC Syst. Biol. 9 (2015)
Lionel Spinelli, Philippe Gambette, Charles E. Chapple, Benoît Robisson, Anaïs Baudot, Henri Garreta, Laurent Tichit, Alain Guénoche, Christine Brun
Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters. Biosyst. 113 (2) (2013)
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Reinhard Schneider, Alfonso Valencia
EnrichNet: network-based gene set enrichment analysis. Bioinform. 28 (18) (2012)
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia
TopoGSA: network topological gene set analysis. Bioinform. 26 (9) (2010)
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Alfonso Valencia
Extending pathways and processes using molecular interaction networks to analyse cancer genome data. BMC Bioinform. 11 (2010)
Jean-Baptiste Angelelli, Anaïs Baudot, Marie-Christine Brun, Alain Guénoche
Two local dissimilarity measures for weighted graphs with application to protein interaction networks. Adv. Data Anal. Classif. 2 (1) (2008)
Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun
Defining a Modular Signalling Network from the Fly Interactome. BMC Syst. Biol. 2 (2008)
Anaïs Baudot, David Martin, Pierre Mouren, François Chevenet, Alain Guénoche, Bernard Jacq, Marie-Christine Brun
PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks. Bioinform. 22 (2) (2006)