Benjamin Audit

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 6

Top Topics

Machine Learning Approaches

Top Venues

PLoS Comput. Biol.

IEEE Signal Process. Lett.

Publications

Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Benjamin Audit, Pierre Borgnat, Jean-Michel Arbona
A Comparative Analysis of Gene Expression Profiling by Statistical and Machine Learning Approaches. CoRR (2024)
Clara Lage, Nelly Pustelnik, Jean-Michel Arbona, Benjamin Audit
Space-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method. IEEE Signal Process. Lett. 31 (2024)
Jean-Michel Arbona, Hadi Kabalane, Jeremy Barbier, Arach Goldar, Olivier Hyrien, Benjamin Audit
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths. PLoS Comput. Biol. 19 (5) (2023)
Myriam Bontonou, Anaïs Haget, Maria Boulougouri, Jean-Michel Arbona, Benjamin Audit, Pierre Borgnat
Studying Limits of Explainability by Integrated Gradients for Gene Expression Models. CoRR (2023)
Rasha E. Boulos, Nicolas Tremblay, Alain Arneodo, Pierre Borgnat, Benjamin Audit
Multi-scale structural community organisation of the human genome. BMC Bioinform. 18 (1) (2017)
Hanna Julienne, Benjamin Audit, Alain Arneodo
Embryonic Stem Cell Specific "Master" Replication Origins at the Heart of the Loss of Pluripotency. PLoS Comput. Biol. 11 (2) (2015)
Lamia Zaghloul, Guénola Drillon, Rasha E. Boulos, Françoise Argoul, Claude Thermes, Alain Arneodo, Benjamin Audit
Large replication skew domains delimit GC-poor gene deserts in human. Comput. Biol. Chem. 53 (2014)
Hanna Julienne, Azedine Zoufir, Benjamin Audit, Alain Arneodo
Human Genome Replication Proceeds through Four Chromatin States. PLoS Comput. Biol. 9 (10) (2013)
Benjamin Audit, Antoine Baker, Rasha E. Boulos, Hanna Julienne, Alain Arneodo, C. L. Chen, Yves d'Aubenton-Carafa, Claude Thermes, Arach Goldar, Guillaume Guilbaud, Aurélien Rappailles, Olivier Hyrien
Relating mammalian replication program to large-scale chromatin folding. BCB (2013)
Antoine Baker, Benjamin Audit, Chun-Long Chen, Benoit Moindrot, Antoine Leleu, Guillaume Guilbaud, Aurélien Rappailles, Cédric Vaillant, Arach Goldar, Fabien Mongelard, Yves D'Aubenton-Carafa, Olivier Hyrien, Claude Thermes, Alain Arneodo
Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines. PLoS Comput. Biol. 8 (4) (2012)
Guillaume Guilbaud, Aurélien Rappailles, Antoine Baker, Chun-Long Chen, Alain Arneodo, Arach Goldar, Yves D'Aubenton-Carafa, Claude Thermes, Benjamin Audit, Olivier Hyrien
Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome. PLoS Comput. Biol. 7 (12) (2011)
Alain Arneodo, Benjamin Audit, Pierre Kestener, Stéphane G. Roux
Wavelet-based multifractal analysis. Scholarpedia 3 (3) (2008)
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis
CORRIE: enzyme sequence annotation with confidence estimates. BMC Bioinform. 8 (S-4) (2007)
Alain Arneodo, Yves D'Aubenton-Carafa, Benjamin Audit, Edward-Benedict Brodie, Samuel Nicolay, Philippe Saint-Jean, Claude Thermes, Marie Touchon, Cédric Vaillant
Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes. EUSIPCO (2006)
Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit
Probabilistic annotation of protein sequences based on functional classifications. BMC Bioinform. 6 (2005)
Leon Goldovsky, Paul Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21 (19) (2005)
Paul Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. Bioinform. 19 (11) (2003)
Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis
Modeling the percolation of annotation errors in a database of protein sequences. Bioinform. 18 (12) (2002)
Benjamin Audit, Emmanuel Bacry, Jean-François Muzy, Alain Arneodo
Wavelet-based estimators of scaling behavior. IEEE Trans. Inf. Theory 48 (11) (2002)