Liam J. McGuffin

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 8

Top Topics

Amino Acid Sequences

Protein Tertiary Structure

Protein Structure

Top Venues

Nucleic Acids Res.

Publications

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51 (W1) (2023)
Liam J. McGuffin, Nicholas S. Edmunds, Ahmet G. Genc, Shuaa M. A Alharbi, Bajuna R. Salehe, Recep Adiyaman
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. Nucleic Acids Res. 51 (W1) (2023)
Liam J. McGuffin, Fahd M. F. Aldowsari, Shuaa M. A Alharbi, Recep Adiyaman
ModFOLD8: accurate global and local quality estimates for 3D protein models. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Recep Adiyaman, Liam J. McGuffin
ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Liam J. McGuffin, Recep Adiyaman, Ali H. A. Maghrabi, Ahmad N. Shuid, Danielle A. Brackenridge, John O. Nealon, Limcy S. Philomina
IntFOLD: an integrated web resource for high performance protein structure and function prediction. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Ali H. A. Maghrabi, Liam J. McGuffin
ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Ahmad N. Shuid, Robert Kempster, Liam J. McGuffin
ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Liam J. McGuffin, Jennifer D. Atkins, Bajuna R. Salehe, Ahmad N. Shuid, Daniel B. Roche
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Daniel B. Roche, Maria T. Buenavista, Liam J. McGuffin
The FunFOLD2 server for the prediction of protein-ligand interactions. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Liam J. McGuffin, Maria T. Buenavista, Daniel B. Roche
The ModFOLD4 server for the quality assessment of 3D protein models. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Maria T. Buenavista, Daniel B. Roche, Liam J. McGuffin
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment. Bioinform. 28 (14) (2012)
Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins. BMC Bioinform. 12 (2011)
Daniel B. Roche, Maria T. Buenavista, Stuart J. Tetchner, Liam J. McGuffin
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Liam J. McGuffin, Daniel B. Roche
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments. Bioinform. 26 (2) (2010)
Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin
The binding site distance test score: a robust method for the assessment of predicted protein binding sites. Bioinform. 26 (22) (2010)
Liam J. McGuffin
The ModFOLD server for the quality assessment of protein structural models. Bioinform. 24 (4) (2008)
Liam J. McGuffin
Intrinsic disorder prediction from the analysis of multiple protein fold recognition models. Bioinform. 24 (16) (2008)
Liam J. McGuffin
Benchmarking consensus model quality assessment for protein fold recognition. BMC Bioinform. 8 (2007)
Liam J. McGuffin, Richard T. Smith, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones
High throughput profile-profile based fold recognition for the entire human proteome. BMC Bioinform. 7 (2006)
Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones
Protein structure prediction servers at University College London. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Chris S. Pettitt, Liam J. McGuffin, David T. Jones
Improving sequence-based fold recognition by using 3D model quality assessment. Bioinform. 21 (17) (2005)
Liam J. McGuffin, Stefano A. Street, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms. Nucleic Acids Res. 32 (Database-Issue) (2004)
Liam J. McGuffin, Stefano A. Street, Søren-Aksel Sørensen, David T. Jones
The Genomic Threading Database. Bioinform. 20 (1) (2004)
Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones
Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures. CSB (2004)
Jonathan J. Ward, Liam J. McGuffin, Kevin Bryson, Bernard F. Buxton, David T. Jones
The DISOPRED server for the prediction of protein disorder. Bioinform. 20 (13) (2004)
Liam J. McGuffin, David T. Jones
Improvement of the GenTHREADER Method for Genomic Fold Recognition. Bioinform. 19 (7) (2003)
Jonathan J. Ward, Liam J. McGuffin, Bernard F. Buxton, David T. Jones
Secondary structure prediction with support vector machines. Bioinform. 19 (13) (2003)
Liam J. McGuffin, Kevin Bryson, David T. Jones
What are the baselines for protein fold recognition? Bioinform. 17 (1) (2001)
Liam J. McGuffin, Kevin Bryson, David T. Jones
The PSIPRED protein structure prediction server. Bioinform. 16 (4) (2000)