Björn Wallner

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 12

Top Topics

Protein Sequences

Structural Matching

Top Venues

Frontiers Bioinform.

J. Comput. Aided Mol. Des.

Nucleic Acids Res.

Publications

Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51 (W1) (2023)
Björn Wallner
AFsample: improving multimer prediction with AlphaFold using massive sampling. Bioinform. 39 (9) (2023)
Isak Johansson-Åkhe, Björn Wallner
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling. Frontiers Bioinform. 2 (2022)
Isak Johansson-Åkhe, Björn Wallner
InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol. Bioinform. 38 (12) (2022)
Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner
InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network. Frontiers Bioinform. 1 (2021)
Isak Johansson-Åkhe, Claudio Mirabello, Björn Wallner
InterPep2: global peptide-protein docking using interaction surface templates. Bioinform. 36 (8) (2020)
Claudio Mirabello, Björn Wallner
InterLig: improved ligand-based virtual screening using topologically independent structural alignments. Bioinform. 36 (10) (2020)
Claudio Mirabello, Björn Wallner
Topology independent structural matching discovers novel templates for protein interfaces. Bioinform. 34 (17) (2018)
Sankar Basu, Fredrik Söderquist, Björn Wallner
Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins. J. Comput. Aided Mol. Des. 31 (5) (2017)
Karolis Uziela, David Menéndez Hurtado, Nanjiang Shu, Björn Wallner, Arne Elofsson
ProQ3D: improved model quality assessments using deep learning. Bioinform. 33 (10) (2017)
Sankar Basu, Björn Wallner
Finding correct protein-protein docking models using ProQDock. Bioinform. 32 (12) (2016)
Karolis Uziela, Björn Wallner
ProQ2: estimation of model accuracy implemented in Rosetta. Bioinform. 32 (9) (2016)
Björn Wallner
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling. Bioinform. 30 (15) (2014)
Arjun Ray, Erik Lindahl, Björn Wallner
Improved model quality assessment using ProQ2. BMC Bioinform. 13 (2012)
Per Larsson, Marcin J. Skwark, Björn Wallner, Arne Elofsson
Improved predictions by Pcons.net using multiple templates. Bioinform. 27 (3) (2011)
Edward J. Bertaccini, Björn Wallner, James R. Trudell, Erik Lindahl
Modeling Anesthetic Binding Sites within the Glycine Alpha One Receptor Based on Prokaryotic Ion Channel Templates: The Problem with TM4. J. Chem. Inf. Model. 50 (12) (2010)
Arjun Ray, Erik Lindahl, Björn Wallner
Model quality assessment for membrane proteins. Bioinform. 26 (24) (2010)
Björn Wallner, Per Larsson, Arne Elofsson
Pcons.net: protein structure prediction meta server. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Björn Wallner, Arne Elofsson
Pcons5: combining consensus, structural evaluation and fold recognition scores. Bioinform. 21 (23) (2005)