Jens Allmer

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 26

Top Topics

Feature Selection

Classification Accuracy

Gene Expression

Machine Learning

Top Venues

J. Integr. Bioinform.

Publications

Savas Takan, Jens Allmer
Community-wide collaboration is a must to reinstall trust in bioinformatics solutions and biomedical interpretation. J. Integr. Bioinform. 20 (1) (2023)
Malik Yousef, Fatma Ozdemir, Amhar Jaber, Jens Allmer, Burcu Bakir-Gungor
PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach. BMC Bioinform. 24 (1) (2023)
Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt
Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21). J. Integr. Bioinform. 18 (4) (2021)
Jens Allmer
Special issue on COVID-19 data integration opportunities and vaccine development strategies. J. Integr. Bioinform. 18 (1) (2021)
Malik Yousef, Jens Allmer
Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features. Algorithms 14 (5) (2021)
Visam Gültekin, Jens Allmer
Novel perspectives for SARS-CoV-2 genome browsing. J. Integr. Bioinform. 18 (1) (2021)
Luise Odenthal, Jens Allmer, Malik Yousef
A Machine Learning-based Approach for the Categorization of MicroRNAs to Their Species of Origin. BIOINFORMATICS (2020)
Jens Allmer
Towards an Internet of Science. J. Integr. Bioinform. 16 (3) (2019)
Malik Yousef, Jens Allmer
Classification of Pre-cursor microRNAs from Different Species Using a New Set of Features. DEXA Workshops (2019)
Malik Yousef, Loai AbdAllah, Jens Allmer
maTE: discovering expressed interactions between microRNAs and their targets. Bioinform. 35 (20) (2019)
Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways. GMDS (2018)
Malik Yousef, Dalit Levy, Jens Allmer
Species Categorization via MicroRNAs - Based on 3'UTR Target Sites using Sequence Features. BIOINFORMATICS (2018)
Malik Yousef, Dawit Nigatu, Dalit Levy, Jens Allmer, Werner Henkel
-mers. EURASIP J. Adv. Signal Process. 2017 (2017)
Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. J. Integr. Bioinform. 14 (1) (2017)
Canan Has, Jens Allmer
PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization. Inf. Sci. 384 (2017)
Muserref Duygu Saçar Demirci, Jens Allmer
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. J. Integr. Bioinform. 14 (2) (2017)
Alexey V. Kochetov, Jens Allmer, Alexandra I. Klimenko, Bulat S. Zuraev, Yury G. Matushkin, Sergey A. Lashin
AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs. Bioinform. 33 (6) (2017)
Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
Distinguishing between MicroRNA Targets from Diverse Species using Sequence Motifs and K-mers. BIOINFORMATICS (2017)
Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
MicroRNA categorization using sequence motifs and k-mers. BMC Bioinform. 18 (1) (2017)
Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. 14 (1) (2017)
Malik Yousef, Jens Allmer, Waleed Khalifa
Feature Selection for MicroRNA Target Prediction - Comparison of One-Class Feature Selection Methodologies. BIOINFORMATICS (2016)
Malik Yousef, Muserref Duygu Saçar, Waleed Khalifa, Jens Allmer
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants. Adv. Bioinformatics 2016 (2016)
Muserref Duygu Saçar Demirci, Mustafa Toprak, Jens Allmer
A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus Genomes. J. Integr. Bioinform. 13 (5) (2016)
Jens Allmer, Malik Yousef
Editorial: Computational miRNomics. J. Integr. Bioinform. 13 (5) (2016)
Canan Has, Sergey A. Lashin, Alexey V. Kochetov, Jens Allmer
PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes. J. Integr. Bioinform. 13 (4) (2016)
Jens Allmer
Exact pattern matching: Adapting the Boyer-Moore algorithm for DNA searches. PeerJ Prepr. 4 (2016)
Müserref Duygu Saçar, Caner Bagci, Jens Allmer
Computational Prediction of MicroRNAs from Toxoplasma gondii Potentially Regulating the Hosts' Gene Expression. Genom. Proteom. Bioinform. 12 (5) (2014)
Muserref Duygu Saçar, Jens Allmer
Comparison of Four Ab Initio MicroRNA Prediction Tools. BIOINFORMATICS (2013)
Muserref Duygu Saçar, Hamid Hamzeiy, Jens Allmer
Can MiRBase Provide Positive Data for Machine Learning for the Detection of MiRNA Hairpins? J. Integr. Bioinform. 10 (2) (2013)
Jens Allmer, Sebastian Kuhlgert, Michael Hippler
2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments. BMC Bioinform. 9 (2008)