Cristian Coarfa

Publication Activity (10 Years)

Years Active: 2000-2015
Publications (10 Years): 0

Top Topics

Software Engineering

Statistical Analysis

Top Venues

Publications

Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
Integrative analysis of 111 reference human epigenomes Open. Nat. 518 (7539) (2015)
Cristian Coarfa, Christina Pichot, Andrew R. Jackson, Arpit Tandon, Viren Amin, Sriram Raghuraman, Sameer Paithankar, Adrian V. Lee, Sean E. McGuire, Aleksandar Milosavljevic
Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. BMC Bioinform. 15 (S-7) (2014)
Kevin Riehle, Cristian Coarfa, Andrew R. Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni-Ann Mistretta, Delphine Saulnier, Sabeen Raza, Maria Diaz, Robert Shulman, Kjersti Aagaard, James Versalovic, Aleksandar Milosavljevic
The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. BMC Bioinform. 13 (S-13) (2012)
Danny Challis, Jin Yu, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu
An integrative variant analysis suite for whole exome next-generation sequencing data. BMC Bioinform. 13 (2012)
Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu
Enabling Atlas2 personal genome analysis on the cloud. GENSiPS (2011)
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Zuozhou Chen, R. Alan Harris, Aleksandar Milosavljevic
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. BMC Bioinform. 11 (2010)
Cristian Coarfa, Aleksandar Milosavljevic
Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. Pacific Symposium on Biocomputing (2008)
Cristian Coarfa, John M. Mellor-Crummey, Nathan Froyd, Yuri Dotsenko
Scalability analysis of SPMD codes using expectations. ICS (2007)
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey
Experiences with Sweep3D implementations in Co-array Fortran. J. Supercomput. 36 (2) (2006)
Cristian Coarfa, Peter Druschel, Dan S. Wallach
Performance analysis of TLS Web servers. ACM Trans. Comput. Syst. 24 (1) (2006)
Yuri Dotsenko, Cristian Coarfa, Luay Nakhleh, John M. Mellor-Crummey, Usman Roshan
PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. Int. J. Bioinform. Res. Appl. 2 (4) (2006)
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, François Cantonnet, Tarek A. El-Ghazawi, Ashrujit Mohanti, Yiyi Yao, Daniel G. Chavarría-Miranda
An evaluation of global address space languages: co-array fortran and unified parallel C. PPOPP (2005)
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. ICPADS (2) (2005)
Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey
A Multi-Platform Co-Array Fortran Compiler. IEEE PACT (2004)
Yuri Dotsenko, Cristian Coarfa, John M. Mellor-Crummey, Daniel G. Chavarría-Miranda
Experiences with Co-array Fortran on Hardware Shared Memory Platforms. LCPC (2004)
Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi
Random 3-SAT: The Plot Thickens. Constraints An Int. J. 8 (3) (2003)
Cristian Coarfa, Yuri Dotsenko
An emerging co-array fortran compiler. PPOPP (2003)
Cristian Coarfa, Yuri Dotsenko, Jason Eckhardt, John M. Mellor-Crummey
Co-array Fortran Performance and Potential: An NPB Experimental Study. LCPC (2003)
Cristian Coarfa, Peter Druschel, Dan S. Wallach
Performance Analysis of TLS Web Servers. NDSS (2002)
Cristian Coarfa, Demetrios D. Demopoulos, Alfonso San Miguel Aguirre, Devika Subramanian, Moshe Y. Vardi
Random 3-SAT: The Plot Thickens. CP (2000)