Jamshed Khan

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 8

Top Topics

Indexing Method

Top Venues

Algorithms Mol. Biol.

Publications

Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro
Fulgor: a fast and compact k-mer index for large-scale matching and color queries. Algorithms Mol. Biol. 19 (1) (2024)
Jamshed Khan, Tobias Rubel, Erin K. Molloy, Laxman Dhulipala, Rob Patro
Fast, parallel, and cache-friendly suffix array construction. Algorithms Mol. Biol. 19 (1) (2024)
Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries. WABI (2023)
Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin K. Molloy, Rob Patro
Fast, Parallel, and Cache-Friendly Suffix Array Construction. WABI (2023)
Jason Fan, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing. RECOMB (2023)
Jamshed Khan, Tahir Hussain, Dania Santina, Nabil Mlaiki
Homothetic Symmetries of Static Cylindrically Symmetric Spacetimes - A Rif Tree Approach. Axioms 11 (10) (2022)
Fatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, Michael Ferdman, Rob Johnson, Prashant Pandey, Rob Patro
An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation. Bioinform. 38 (12) (2022)
Jamshed Khan, Rob Patro
Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections. Bioinform. 37 (Supplement) (2021)