Jason Fan

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 8

Top Topics

Indexing Method

Top Venues

Algorithms Mol. Biol.

J. Comput. Biol.

Publications

Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro
Fulgor: a fast and compact k-mer index for large-scale matching and color queries. Algorithms Mol. Biol. 19 (1) (2024)
Giulio Ermanno Pibiri, Jason Fan, Rob Patro
Meta-colored Compacted de Bruijn Graphs. RECOMB (2024)
Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries. WABI (2023)
Jason Fan, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing. RECOMB (2023)
Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures. J. Comput. Biol. 29 (1) (2022)
Jason Fan, Skylar Chan, Rob Patro
Perplexity: evaluating transcript abundance estimation in the absence of ground truth. Algorithms Mol. Biol. 17 (1) (2022)
Jason Fan, Skylar Chan, Rob Patro
Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth. WABI (2021)
Mark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott
A Multi-species Functional Embedding Integrating Sequence and Network Structure. RECOMB (2018)