Mark D. M. Leiserson

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 16

Top Topics

Dirichlet Prior

Bayesian Network Structure

Top Venues

PLoS Comput. Biol.

Publications

Itay Kahane, Mark D. M. Leiserson, Roded Sharan
A mutation-level covariate model for mutational signatures. PLoS Comput. Biol. 19 (6) (2023)
Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures. J. Comput. Biol. 29 (1) (2022)
Gal Gilad, Mark D. M. Leiserson, Roded Sharan
A data-driven approach for constructing mutation categories for mutational signature analysis. PLoS Comput. Biol. 17 (10) (2021)
Damian Wójtowicz, Mark D. M. Leiserson, Roded Sharan, Teresa M. Przytycka
DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures. PSB (2020)
Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
Session Introduction. PSB (2020)
Itay Sason, Yuexi Chen, Mark D. M. Leiserson, Roded Sharan
A Mixture Model for Signature Discovery from Sparse Mutation Data. RECOMB (2020)
Sarah Christensen, Mark D. M. Leiserson, Mohammed El-Kebir
PhySigs: Phylogenetic Inference of Mutational Signature Dynamics. PSB (2020)
Itay Sason, Damian Wójtowicz, Welles Robinson, Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan
A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer. RECOMB (2019)
Nathaniel Swinger, Maria De-Arteaga, Neil Thomas Heffernan IV, Mark D. M. Leiserson, Adam Tauman Kalai
What are the Biases in My Word Embedding? AIES (2019)
Welles Robinson, Roded Sharan, Mark D. M. Leiserson
Modeling clinical and molecular covariates of mutational process activity in cancer. Bioinform. 35 (14) (2019)
Matthew A. Reyna, Mark D. M. Leiserson, Benjamin J. Raphael
Hierarchical HotNet: identifying hierarchies of altered subnetworks. Bioinform. 34 (17) (2018)
Nathaniel Swinger, Maria De-Arteaga, Neil Thomas Heffernan IV, Mark D. M. Leiserson, Adam Tauman Kalai
What are the biases in my word embedding? CoRR (2018)
Cynthia Dwork, Nicole Immorlica, Adam Tauman Kalai, Mark D. M. Leiserson
Decoupled Classifiers for Group-Fair and Efficient Machine Learning. FAT (2018)
Mark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott
A Multi-species Functional Embedding Integrating Sequence and Network Structure. RECOMB (2018)
Mark D. M. Leiserson, Matthew A. Reyna, Benjamin J. Raphael
A weighted exact test for mutually exclusive mutations in cancer. Bioinform. 32 (17) (2016)
Mark D. M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer. RECOMB (2015)
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data. BMC Bioinform. 14 (2013)
Mark D. M. Leiserson, Dima Blokh, Roded Sharan, Benjamin J. Raphael
Simultaneous Identification of Multiple Driver Pathways in Cancer. PLoS Comput. Biol. 9 (5) (2013)
Andrew Gallant, Mark D. M. Leiserson, Maxim Kachalov, Lenore J. Cowen, Benjamin J. Hescott
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data. BCB (2012)
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut. J. Comput. Biol. 18 (11) (2011)
Mark D. M. Leiserson, Diana Tatar, Lenore J. Cowen, Benjamin J. Hescott
Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut. RECOMB (2011)
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore J. Cowen, Donna K. Slonim
Evaluating Between-Pathway Models with Expression Data. J. Comput. Biol. 17 (3) (2010)
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim
Evaluating Between-Pathway Models with Expression Data. RECOMB (2009)