Perplexity: evaluating transcript abundance estimation in the absence of ground truth.
Jason FanSkylar ChanRob PatroPublished in: Algorithms Mol. Biol. (2022)
Keyphrases
- ground truth
- language model
- estimation algorithm
- topic models
- ground truth data
- maximum likelihood estimation
- gold standard
- latent dirichlet allocation
- manually labeled
- neural network
- robust estimation
- parameter estimation
- density estimation
- human subjects
- semi supervised
- information extraction
- quantitative evaluation
- hidden markov models
- feature extraction
- learning algorithm
- information retrieval