Chengze Shen

Publication Activity (10 Years)

Years Active: 2022-2023
Publications (10 Years): 6

Top Topics

Biological Sequences

Multiple Sequence Alignments

Global Alignment

Top Venues

J. Comput. Biol.

Algorithms Mol. Biol.

Publications

Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract). WABI (2023)
Eleanor Wedell, Chengze Shen, Tandy J. Warnow
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract). WABI (2023)
Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow
UPP2: fast and accurate alignment of datasets with fragmentary sequences. Bioinform. 39 (1) (2023)
Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow
EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment. Algorithms Mol. Biol. 18 (1) (2023)
Chengze Shen, Minhyuk Park, Tandy J. Warnow
WITCH: Improved Multiple Sequence Alignment Through Weighted Consensus Hidden Markov Model Alignment. J. Comput. Biol. 29 (8) (2022)
Chengze Shen, Paul Zaharias, Tandy J. Warnow
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences. Bioinform. 38 (4) (2022)