David Koslicki

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 15

Top Topics

Motif Discovery

Subgraph Isomorphism

Top Venues

IEEE Signal Process. Lett.

Publications

David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov
: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample. Bioinform. 40 (2) (2024)
Mahmudur Rahman Hera, David Koslicki
Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation. WABI (2024)
Amy Glen, Chunyu Ma, Luis Mendoza, Finn Womack, E. C. Wood, Meghamala Sinha, Liliana Acevedo, Lindsey G. Kvarfordt, Ross C. Peene, Shaopeng Liu, Andrew S. Hoffman, Jared C. Roach, Eric W. Deutsch, Stephen A. Ramsey, David Koslicki
ARAX: a graph-based modular reasoning tool for translational biomedicine. Bioinform. 39 (3) (2023)
Wei Wei, Andrew Millward, David Koslicki
2UniFrac. Bioinform. 39 (Supplement-1) (2023)
E. C. Wood, Amy Glen, Lindsey G. Kvarfordt, Finn Womack, Liliana Acevedo, Timothy S. Yoon, Chunyu Ma, Veronica Flores, Meghamala Sinha, Yodsawalai Chodpathumwan, Arash Termehchy, Jared C. Roach, Luis Mendoza, Andrew S. Hoffman, Eric W. Deutsch, David Koslicki, Stephen A. Ramsey
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine. BMC Bioinform. 23 (1) (2022)
David Koslicki, Dana Gibbon, Mark Novak
PressPurt: network sensitivity to press perturbations under interaction uncertainty. F1000Research 11 (2022)
Wei Wei, David Koslicki
WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data. WABI (2022)
Chunyu Ma, Zhihan Zhou, Han Liu, David Koslicki
Predicting Drug Repurposing Candidates and Their Mechanisms from A Biomedical Knowledge Graph. CoRR (2022)
Varuni Sarwal, Serghei Mangul, David Koslicki
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. IPDPS Workshops (2022)
Antonio Blanca, Robert S. Harris, David Koslicki, Paul Medvedev
The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches. J. Comput. Biol. 29 (2) (2022)
Simon Foucart, David Koslicki
Finer Metagenomic Reconstruction via Biodiversity Optimization. NeurIPS (2020)
David Koslicki, Hooman Zabeti
Improving MinHash via the containment index with applications to metagenomic analysis. Appl. Math. Comput. 354 (2019)
Soha Hassoun, Yasser El-Manzalawy, Georg Gerber, David Koslicki, Gail Rosen
Workshop on Microbiomics, Metagenomics, and Metabolomics. BCB (2019)
Mitra Ansariola, Molly Megraw, David Koslicki
IndeCut evaluates performance of network motif discovery algorithms. Bioinform. 34 (9) (2018)
Serghei Mangul, David Koslicki
Reference-free comparison of microbial communities via de Bruijn graphs. BCB (2016)
Simon Foucart, David Koslicki
Sparse Recovery by Means of Nonnegative Least Squares. IEEE Signal Process. Lett. 21 (4) (2014)
Saikat Chatterjee, David Koslicki, Siyuan Dong, Nicolas Innocenti, Lu Cheng, Yueheng Lan, Mikko Vehkaperä, Mikael Skoglund, Lars K. Rasmussen, Erik Aurell, Jukka Corander
-mer-based estimation of bacterial community composition. Bioinform. 30 (17) (2014)
David Koslicki, Simon Foucart, Gail Rosen
Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing. Bioinform. 29 (17) (2013)
David Koslicki
Topological entropy of DNA sequences. Bioinform. 27 (8) (2011)